PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0941
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 194aa    MW: 22313.1 Da    PI: 6.5089
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0941genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.44.1e-1582131554
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                  +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ ++
  Gh_A03G0941  82 RKQRRMISNRESARRSRMRKQKHLDELWCQVTRLRNENHSLIDKLNHVSE 131
                  79*******************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-1678142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.51980131IPR004827Basic-leucine zipper domain
PfamPF001701.3E-1282131IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-1382155No hitNo description
SuperFamilySSF579593.46E-1382131No hitNo description
CDDcd147027.21E-2083134No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAPGELAGLH YLAPENPILN PANLGMMQNT IPAFHFNRFL NSLPNFNILQ PAHEFTAQSS  60
SMSNYSTSDE AEEHQVNIID ERKQRRMISN RESARRSRMR KQKHLDELWC QVTRLRNENH  120
SLIDKLNHVS ECHDLVLQEN AKLKEEASDL RQMLTDLKIG SPYLKELEEV PCNTAHLRAE  180
STNQSIANSV DFLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667802.11e-142PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC23e-34BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1U8HP391e-140A0A1U8HP39_GOSHI; basic leucine zipper 43-like
STRINGGorai.005G148600.11e-130(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.12e-46basic leucine-zipper 58
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]