PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A03G0883 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 444aa MW: 49810.5 Da PI: 8.0207 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.8 | 3.9e-11 | 121 | 178 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ +R k+c++rw++ Gh_A03G0883 121 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLEgrsgkivaknsGKRKSKSCRLRWFNQ 178 899*****************************99999999999889999999999985 PP | |||||||
2 | Myb_DNA-binding | 57.2 | 3.7e-18 | 185 | 228 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ Gh_A03G0883 185 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 228 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.038 | 116 | 171 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-11 | 120 | 181 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-10 | 121 | 178 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.66E-24 | 121 | 226 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-22 | 122 | 186 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.23E-10 | 124 | 177 | No hit | No description |
PROSITE profile | PS51294 | 27.592 | 180 | 234 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-15 | 184 | 232 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-15 | 185 | 227 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.52E-12 | 187 | 227 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-21 | 187 | 233 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 444 aa Download sequence Send to blast |
MNRLSCHSSA TPSSSSSSMG MVYPDMGCLS LAPNYGIVVS SSRENERASS GFRFMENSKT 60 RSFEENHCSD AVEGKGSDYS DGFGDNNMPI NLNPNLNEEN PNENAVSGKE TDSGQSKLCA 120 RGHWRPAEDT KLKELVALYG PQNWNLIAEK LEGRSGKIVA KNSGKRKSKS CRLRWFNQLD 180 PRINRRAFTE EEEERLMQAH RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKYREQSSA 240 YRRRKLSQSV YRKMEETPNI VCRDAGTKAE PAPYCLNISD RRLGIISHYQ FGIFNGGDAG 300 GVNGGSNVSP HMTSEREAIL SSEAPYRNGF CAQAQPPPFD FFPDLSNDMM GMFSQTRFWD 360 RPIDETQVRG YYPQRQHQQL HPSHMMTMQQ SEFLSSQSNT DSTASITPQV SAIEPSSSVA 420 GSSNYSHYET ILPPFIDFLG VGAT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 121 | 233 | 7 | 107 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.23855 | 1e-93 | boll |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM052727 | 0.0 | KM052727.1 Gossypium hirsutum LOF-like transcription factor LOF3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016667150.1 | 0.0 | PREDICTED: uncharacterized protein LOC107887423 isoform X1 | ||||
Swissprot | Q9SEZ4 | 8e-76 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A1U8HM74 | 0.0 | A0A1U8HM74_GOSHI; uncharacterized protein LOC107887423 isoform X1 | ||||
STRING | Gorai.005G142000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 4e-75 | myb domain protein 105 |
Publications ? help Back to Top | |||
---|---|---|---|
|