PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G0881

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 364aa MW: 40578.8 Da PI: 6.8528

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G0881	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPk++++++++ gLtl+h+kSHLQkYRl Gh_A03G0881 38 KPRLKWTPELHQRFVEAVNQLGGPDKATPKNLMRVIGISGLTLYHLKSHLQKYRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.522	35	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-30	36	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.91E-16	37	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-23	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-8	40	91	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-23	136	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MSFSFLLPSA CLSYTTQILA LHNMQNQDMN LVLSTDAKPR LKWTPELHQR FVEAVNQLGG 60 PDKATPKNLM RVIGISGLTL YHLKSHLQKY RLGKSQQTEI CLSDNLDDYR EIQSSNRDLS 120 SDTSDGTHKL MNESSKIAQA LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ 180 ETLAGYTSSS VGVELAKAEL SQLVSMVNTG CTSSSLSELT EIGGSSLKQM ERRPMKGTIC 240 SRESSLTSSE SSGRTEDEEP PKNENICIRK SNTCFEFNFM EIYPEKKGLI SGSSNEVSGK 300 KRSGTNICDG ICVDQPVAKR LELPEEETGC GLRKSGLLGS FDLNNQYQND NESSPKAIDL 360 NRKE

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MSFSFLLPSA CLSYTTQILA LHNMQNQDMN LVLSTDAKPR LKWTPELHQR FVEAVNQLGG  60
PDKATPKNLM RVIGISGLTL YHLKSHLQKY RLGKSQQTEI CLSDNLDDYR EIQSSNRDLS  120
SDTSDGTHKL MNESSKIAQA LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ  180
ETLAGYTSSS VGVELAKAEL SQLVSMVNTG CTSSSLSELT EIGGSSLKQM ERRPMKGTIC  240
SRESSLTSSE SSGRTEDEEP PKNENICIRK SNTCFEFNFM EIYPEKKGLI SGSSNEVSGK  300
KRSGTNICDG ICVDQPVAKR LELPEEETGC GLRKSGLLGS FDLNNQYQND NESSPKAIDL  360
NRKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578986	2e-57	JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016666947.1	0.0	PREDICTED: two-component response regulator ORR23-like isoform X1
Swissprot	F4I274	2e-82	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A1U8HLL6	0.0	A0A1U8HLL6_GOSHI; two-component response regulator ORR23-like isoform X1
STRING	Gorai.005G141900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.2	1e-84	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]