PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G0874 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 387aa MW: 43182 Da PI: 7.5559 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169 | 1.5e-52 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++Pw+Lpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++ Gh_A03G0874 15 MLPGFRFHPTDEELVGFYLKRKIQQRPLSV-ELIKQLDIYKYDPWELPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGS 111 579***************************.89***************8888999***************************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfykgra kg+ktdW+mhe+rl Gh_A03G0874 112 KCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 142 77***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-58 | 13 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.974 | 15 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-25 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MDERVSDSDK MEEIMLPGFR FHPTDEELVG FYLKRKIQQR PLSVELIKQL DIYKYDPWEL 60 PKLATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYKGRAAKG VKTDWMMHEF RLPSLTDSAP TPPKRFLDKC LPANDSWAIC RIFKKTNSTA 180 QRALCHSWVS PKPETSSISD MLSRGSDTSQ LSSDNISLTP KTSSSPVQFN LISNTDLLQT 240 SSAAFSPLDF VPYKPLSQMA PQLPISNGDL TSLIFAPLDQ TPSPAKSAVD VTSVLLNMSS 300 SMLGEYDSTV HFHGGSQDHC TGFSSGTLPH GMQGNMVINN EDHENALLKN LNVTHVDDQW 360 DGIRSIGFPF SLPLPMSVAD AWKPSIP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-54 | 5 | 182 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 5 | 182 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 5 | 182 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 5 | 182 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-54 | 5 | 182 | 6 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 5 | 182 | 6 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847227 | 0.0 | KC847227.1 Gossypium hirsutum NAC domain protein NAC50 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016667784.1 | 0.0 | PREDICTED: protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 1e-118 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1U8HWQ3 | 0.0 | A0A1U8HWQ3_GOSHI; protein FEZ-like | ||||
STRING | Gorai.005G141200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-120 | NAC family protein |
Publications ? help Back to Top | |||
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