PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G0840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | RAV | ||||||||
Protein Properties | Length: 346aa MW: 38422.7 Da PI: 10.0208 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.5 | 3.9e-14 | 58 | 106 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g Gh_A03G0840 58 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAARRFRG 106 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 104.4 | 6.1e-33 | 189 | 290 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+ tpsdv+k++rlv+pk++ae++ gg++ +++ l led +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ e++l+ Gh_A03G0840 189 FEKAVTPSDVGKLNRLVIPKQHAEKYfplesGGSSSKGVLLNLEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGAEKKLY 286 89*****************************88899****************************************************8866777788 PP EEEE CS B3 94 vkvf 97 +++ Gh_A03G0840 287 IHWK 290 8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-8 | 58 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.25E-25 | 58 | 116 | No hit | No description |
SuperFamily | SSF54171 | 3.2E-17 | 58 | 115 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.981 | 59 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-21 | 59 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-30 | 59 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 9.6E-41 | 183 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-32 | 188 | 291 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.22E-29 | 188 | 288 | No hit | No description |
PROSITE profile | PS50863 | 14.861 | 189 | 291 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-30 | 189 | 291 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-27 | 189 | 293 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MDGGCIAIDE SKTSDSMSIS ISSLLPAVTK SPDSLCRVGS RTSVIVESKA ESKKLPSSKY 60 KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA ARRFRGPDAV TNFKHLRETE 120 EDGIEIAFLN THSKAEIIDM LRKHTYNDEL EQSRTRRCYG FDGNGKRVVG NEAVFGSFGA 180 EVKARDQLFE KAVTPSDVGK LNRLVIPKQH AEKYFPLESG GSSSKGVLLN LEDVTGKVWR 240 FRYSYWNSSQ SYVLTKGWSR FVKEKNLKAG DIVSFQRSTG AEKKLYIHWK AKSGLGNPVG 300 LRLFGVKIFG GAATGNLGCT NGKRTREIEL LALECSKKQR AIINAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 7e-58 | 186 | 294 | 11 | 119 | DNA-binding protein RAV1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in all tissues examined: Roots, rosette leaves, cauline leaves, inflorescence stems, flowers and siliques. Highest expression in roots and rosette leaves. Very low expression in flowers. {ECO:0000269|PubMed:9862967}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ618849 | 0.0 | JQ618849.1 UNVERIFIED: Gossypium hirsutum RAV1-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016666816.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-139 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A1U8HL92 | 0.0 | A0A1U8HL92_GOSHI; AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
STRING | Gorai.005G138100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-139 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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