PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0490
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 554aa    MW: 60699.5 Da    PI: 6.0749
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0490genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-12369411754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Gh_A03G0490 369 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 411
                  79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-16365434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14368417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9368411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15369424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-12369415No hitNo description
CDDcd048731.88E-4483543No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MLPRVNGGVI WMEDKEDEDS ASWNRTNYNS NNNNNNNNSG VIMENKEDMG TFSTFKSMLD  60
DEWYVGNNSI SSHQDIRDLS FTSNLGDHHR DNLLLHHHSL PSVDSSSSCS PSSSVFNHLN  120
PSQVQYFCQP KPNLSSILNF VSNSPLDHGF DLSEIGFLDN QATNGTTLLN RGNAGVLGSL  180
TDLGHDNHLD PANLCPEAQF SSSRIAQLPE NGAGFAGFQG FDENPGNALF LKRSKLLRPL  240
ESCPSVGAQP NLFQKRAAMR KNSTDSGPNF GVLDGGKVSV SSGTGGDKGK KEMGKEENEK  300
RKINSRDDVE DVSIDGSALN YDSDEFTENT KVEETLKNGG NTINANTSAT GGDQNQKGKR  360
KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI LGDAIEYLKE LLQRINDLHN  420
ELESILPSSS LTPTTSSFHP LTPTPATFPS RIKDELGPSS SPGLNGQPAR VEVRLREGKA  480
VNIHMFCGRR PGLLLSIIRA LDNLGLDAQQ AVISCFNGFS MDIFRAEQCK EGQDINPENI  540
KAVLLDSTGF PNMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358376KRKGLPAKNLMAERRRRKK
2370377ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016665568.10.0PREDICTED: transcription factor ICE1-like
TrEMBLA0A1U8HNL40.0A0A1U8HNL4_GOSHI; transcription factor ICE1-like
STRINGGorai.003G116300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-106bHLH family protein