PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G0365 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 760aa MW: 85754.9 Da PI: 4.8833 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355.2 | 9.7e-109 | 383 | 757 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+avs++d + a++lL++++e++sp gd++qRla f+ +L+arl +s+ + ++ +++ ++ ++ l+a+k++ +P+ k++ l a Gh_A03G0365 383 LRTLLILCAQAVSADDRRTASELLKQIKEHSSPLGDANQRLAYIFADGLEARLDGSGALIHVFYASLASKMTTAADILKAYKAYLCSCPFTKLAILFA 480 5789***************************************************777776666777777777************************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N+ I+ +e+ + +Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p+ g +e++eetg+rLak++e+++vpfe+n+++++++e++++e++ Gh_A03G0365 481 NKSIYHMAEKTSVLHIVDFGILYGFQWPILIQHLSTRPGGPPKLRITGIEIPQRGfrPAERIEETGRRLAKYCERFNVPFEYNPIAVEHWETIQIEDI 578 *****************************************************99******************************************* PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+laVn+ ++ h+llde+++++ +r+++Lkl+++++P+++v++ + +n++ F++rf e l + sa+fd +e++lpre+ +r + Ere+ gr Gh_A03G0365 579 KIDSNEMLAVNSLFRFHNLLDETADVDCPRNAMLKLIRKMKPDIFVHSIVNGAYNAPFFVTRFKEVLFHISAVFDVFENTLPREELARLMFEREFYGR 676 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e++nv+aceg++r++r et+++W+ r + GFkp+pl+++ +k ++ l+ + + + ++e+++++++gWk+r L+ S+W Gh_A03G0365 677 EAMNVIACEGSARVQRPETYKQWQIRTLREGFKPLPLDQELMKIIRDKLKAWYHKDFVIDEDNHWMLQGWKGRILYGSSCW 757 *****************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.667 | 357 | 738 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-106 | 383 | 757 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 760 aa Download sequence Send to blast |
MTMDPNSIEI SDYLNCFKVE DHTFHNGFEF NVPSPDLNFM NMNVPFIPLD SDPGINVPSI 60 TASSDGSPFS ASTGWSPLGE SYSPPSDSDS TDPVLKYISQ MLMEENMEDK PYMFNDYLAL 120 EDTEKSLYDA LVSNIIQPVK VESPDSNLFG TNGHSDASIS SRSGTSDHIN PRGIGEVGGP 180 DPSLLRAPYS LQPDLQQSSS QFSVDSVNSL SNIGNGLMES SVSELLVKNI FSDKESVLQF 240 QRGFEEASKF IPSSEQLVID LESSTFAVGK KVDVPKVVVK VEKDEREISS NGLTGRKNHE 300 RDDWELEDER SNKQSATYTE ESDLSEVFDK VLLCTEGKTM CGIDQTVQHG ETDSSQHEEQ 360 LDGSIVGRNR SKRQGKKKEV VDLRTLLILC AQAVSADDRR TASELLKQIK EHSSPLGDAN 420 QRLAYIFADG LEARLDGSGA LIHVFYASLA SKMTTAADIL KAYKAYLCSC PFTKLAILFA 480 NKSIYHMAEK TSVLHIVDFG ILYGFQWPIL IQHLSTRPGG PPKLRITGIE IPQRGFRPAE 540 RIEETGRRLA KYCERFNVPF EYNPIAVEHW ETIQIEDIKI DSNEMLAVNS LFRFHNLLDE 600 TADVDCPRNA MLKLIRKMKP DIFVHSIVNG AYNAPFFVTR FKEVLFHISA VFDVFENTLP 660 REELARLMFE REFYGREAMN VIACEGSARV QRPETYKQWQ IRTLREGFKP LPLDQELMKI 720 IRDKLKAWYH KDFVIDEDNH WMLQGWKGRI LYGSSCWVPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-45 | 372 | 759 | 7 | 379 | Protein SCARECROW |
5b3h_D | 2e-45 | 372 | 759 | 7 | 379 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 367 | 372 | RNRSKR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017639189.1 | 0.0 | PREDICTED: scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2P5W8M7 | 0.0 | A0A2P5W8M7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G130500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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