PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0274
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 716aa    MW: 79142 Da    PI: 8.4144
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0274genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-23108209199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t++  d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF +  ++++ 
  Gh_A03G0274 108 FAKTLTQSDANNGGGFSVPRYCAETIfpsldytADPPVQ--TVVAVDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLR--SENGG 201
                  89****************************997556555..8************************************************4..47777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Gh_A03G0274 202 LCVGIRRA 209
                  8****996 PP
2Auxin_resp117.31.3e-38257340183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++++FevvY+Prast+eF+vk+++v++a++v+++ GmRfkmafetedss++++ +Gt ++v+ +dp+rWpnS+Wr+L+
  Gh_A03G0274 257 AATLAASGQPFEVVYYPRASTPEFCVKASSVKAAMRVPWCCGMRFKMAFETEDSSRISWfMGTLSSVQVVDPIRWPNSPWRLLQ 340
                  68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-37100215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-28106210IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-21107208No hitNo description
PfamPF023621.7E-21108209IPR003340B3 DNA binding domain
SMARTSM010194.0E-22108210IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957108210IPR003340B3 DNA binding domain
PfamPF065072.4E-33257340IPR010525Auxin response factor
PROSITE profilePS5174512.34574650IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MKESEKSLDP QLWHACAGPM VQIPPLNSKV FYFPQGHAEH SLAAVDFPSS PPVPALVLCR  60
VASLKFMADT ETDEVYAKIL LMPLPSTELD IENDTVFGSD NAEKPASFAK TLTQSDANNG  120
GGFSVPRYCA ETIFPSLDYT ADPPVQTVVA VDVHGETWKF RHIYRGTPRR HLLTTGWSTF  180
VNHKKLVAGD SIVFLRSENG GLCVGIRRAK RGTGNGPEAG SPFLSFLRED ESKMMMMNRN  240
GDWRGKGKLK AEAVLQAATL AASGQPFEVV YYPRASTPEF CVKASSVKAA MRVPWCCGMR  300
FKMAFETEDS SRISWFMGTL SSVQVVDPIR WPNSPWRLLQ VTWDEPDLLQ NVKRVSPWLV  360
ELVSNVPAIH LSPFSPPRKK SRFPQHLDFP LDGQFPMSAF SSNGNPHGTG CPLVLSDNAP  420
AGIQGARHAQ FGLSVSDLHL NNKLQSGLFL PGFQRFDPHS RISDGIMMAR RPNGTDNLSC  480
LLTIGNSNVN EKSGNTKRHQ FLLFGQPILT EQQLSRSCSS EVVSQVINGN SSLDGSAEKT  540
KDTSDGSRSS LEKSSTAGFL WHQDYRSTET GLDIGHCKVF LDSEDVGRTL DLSVVGSYEE  600
LYRRLANMFG IERSKMLGHV LYRDATGAVK QTGEEPFRYQ FEKPVHLFRS FNLALGLYLH  660
NLPMLYCSAF MKTAKRLTIR MDSSNETVAR SWLTGIRTAE NGLGGPSKRG PLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-83836151388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.15110.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0036100.0DQ003610.1 Gossypium raimondii putative auxin response factor 10 (ARF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638542.10.0PREDICTED: auxin response factor 10-like isoform X1
RefseqXP_017638543.10.0PREDICTED: auxin response factor 10-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0D2QKM00.0A0A0D2QKM0_GOSRA; Auxin response factor
STRINGGorai.003G142500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]