PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0263
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 694aa    MW: 76553.8 Da    PI: 6.914
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0263genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-094935301954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Gh_A03G0263 493 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 530
                  564459******************************87 PP
2BELL99.91.9e-32354421471
         BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                  e q+kkakLl l+eeV++rYk y++q+q+v+ssFe vagl sa+pY+slAlk++ ++Frc+k+ai+++
  Gh_A03G0263 354 EYQQKKAKLLYLQEEVCRRYKLYYQQMQMVVSSFESVAGLSSATPYVSLALKTVEKNFRCIKNAISDR 421
                  89***************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-37258420IPR006563POX domain
PfamPF075264.6E-37263419IPR006563POX domain
PROSITE profilePS5007112.179471534IPR001356Homeobox domain
SMARTSM003891.8E-8474538IPR001356Homeobox domain
CDDcd000866.38E-12474535No hitNo description
SuperFamilySSF466895.13E-17475540IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27477538IPR009057Homeodomain-like
PfamPF059203.2E-18491530IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MSFLGMDMSK FKLESHVAQQ SRRDKLRVHH LGLNPDLVQV RSVRNANLLY DPTFVSPHQE  60
LTEDEESCSR EMPANGSCKV PGDPQSCGDW VMGYGINQNP MFDAAMGYPK PNYSEICSQD  120
SKRHCGELHF VSSSLYDVVT TASLGTQGLE MASMTHQASA LQCGNGGGAW TNIRPVLEDG  180
QQWADAATNT TQGLSLTLSS NTTCGAAQFT DDQFCSHRFK ESQDSKALNT AHLYSMQKPS  240
IISKGSGNST CVPLGPFTGY ATILKNSKFL KPAEQLLDQY CHIANSKLAK VCETSDAVIG  300
DIGDLASADD ANAVDMEDRA IKGNNSGASI SSFCSSNEIS VAVGIGSSSS CRPEYQQKKA  360
KLLYLQEEVC RRYKLYYQQM QMVVSSFESV AGLSSATPYV SLALKTVEKN FRCIKNAISD  420
RVRHICRALG EDLLSSTTGA SSSKGDINMS RLKYEVQKSG GVNVGFLEPQ QQGWRPQRGL  480
PERAVAILRA WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH  540
MLESKGLAEN NPNSSKTTEA KSPSTNRPNE DQRIDRPCIN ATSMEQLTCS GTAVAGTTGD  600
AHDTERWFHD KPLRMDFRIP TSMEGSLLSF APYEQSRLEM GGLGAVSLTL GLRHGVETAQ  660
AHQHQHRHRQ QQYQSQEDQL QRPFGGQMVH DFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16480537158Homeobox protein Meis1
4xrs_B2e-16480537158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.110440.0ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5807342e-80JX580734.1 Gossypium hirsutum clone NBRI_GE13227 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016755907.10.0PREDICTED: BEL1-like homeodomain protein 8 isoform X1
RefseqXP_016755908.10.0PREDICTED: BEL1-like homeodomain protein 8 isoform X1
RefseqXP_016755909.10.0PREDICTED: BEL1-like homeodomain protein 8 isoform X1
RefseqXP_016755910.10.0PREDICTED: BEL1-like homeodomain protein 8 isoform X1
TrEMBLA0A1U8PXN70.0A0A1U8PXN7_GOSHI; BEL1-like homeodomain protein 8 isoform X1
STRINGGorai.003G143600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.18e-87BEL1-like homeodomain 8