PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1782
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 151aa    MW: 17440 Da    PI: 9.6575
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1782genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.67.9e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ien   rqvtfskRrng+lKKA ELS+LCdaev+viifs+tgkly +ss
  Gh_A02G1782  9 KKIENLNSRQVTFSKRRNGLLKKARELSILCDAEVSVIIFSTTGKLYQWSS 59
                 68***********************************************96 PP
2K-box41.46.2e-15831461075
        K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                  ++a+++s + +++ Lk+e+ +L+    +l G++Le Ls+ke qqLe+qL++++ +i+++K  ++++
  Gh_A02G1782  83 QKAEQNSQSVDVSTLKEEYLKLRAAYMRLNGKELEGLSFKEVQQLEHQLNEGILSIKEHK--VFTN 146
                  566667778899********************************************9987..4555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.889161IPR002100Transcription factor, MADS-box
CDDcd002653.02E-40273No hitNo description
SuperFamilySSF554556.15E-32275IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-29323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-984143IPR002487Transcription factor, K-box
PROSITE profilePS512977.86187151IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KARELSILCD AEVSVIIFST TGKLYQWSST  60
SMEDTLLKYN RGKIVEQHPF DEQKAEQNSQ SVDVSTLKEE YLKLRAAYMR LNGKELEGLS  120
FKEVQQLEHQ LNEGILSIKE HKVFTNQISF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-23169169MEF2C
5f28_B2e-23169169MEF2C
5f28_C2e-23169169MEF2C
5f28_D2e-23169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721144.15e-99PREDICTED: agamous-like MADS-box protein AGL18
SwissprotQ392956e-46AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A1U8M6I61e-97A0A1U8M6I6_GOSHI; agamous-like MADS-box protein AGL18
STRINGGorai.003G090800.17e-93(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.15e-48AGAMOUS-like 15