PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G1702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 341aa MW: 39437.5 Da PI: 9.4202 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.7 | 3.1e-25 | 208 | 257 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl+kyF+lpi +A+++L+v+l vLKr+CR++GI+RWPhRkiksl Gh_A02G1702 208 ARIALEDLAKYFDLPIVEASRNLNVGLIVLKRKCREFGIPRWPHRKIKSL 257 6899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.916 | 192 | 277 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.7E-20 | 210 | 257 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDLSQGPCLT TLVVFENTIN KELIRSLHVY RLENGEENEV EREFVFRKDG PYVETAAAPL 60 LLLQGVPAHE LFEGRVIGLW LCSFAFHIHR LPRFFFIPSL LSISRNPKLK SIPTLTNDLQ 120 LIFQRGCGTE DRGPSRELSK ETCTRDGDNH YHLKRSLLVL DQDLNCLPNS SATSELLKSR 180 QTEQNATGSF RASFFCEKEK RADSKDVARI ALEDLAKYFD LPIVEASRNL NVGLIVLKRK 240 CREFGIPRWP HRKIKSLDGL IRDLLSLSLL LKRLKTQIMQ EEAEQRQQDE AAAYAVAKRR 300 MMLETEKESI EKEPFIELKS ETKRFRQDIF KRRHKARALK N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016726260.1 | 0.0 | PREDICTED: protein RKD5 | ||||
Swissprot | O81791 | 2e-89 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | A0A0B0NF67 | 0.0 | A0A0B0NF67_GOSAR; Protein RKD5-like protein | ||||
TrEMBL | A0A2P5WDN9 | 0.0 | A0A2P5WDN9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G002500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12049 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 1e-72 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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