PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1617
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 181aa    MW: 21019.2 Da    PI: 10.3059
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1617genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.21.2e-19942134
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae 34
                 k+ien +nrqvt+skRrng++KKA+EL vLCda+
  Gh_A02G1617  9 KKIENATNRQVTYSKRRNGLFKKAQELTVLCDAK 42
                 68******************************96 PP
2K-box79.39.4e-27411261499
        K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  a+++++++++Lk+ +++L+re+R+++G dL++L++keLq Le ++++sl  iR++K++++++q+++ +kk ++l+e++ +L + le
  Gh_A02G1617  41 AKRMEENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLVMDLE 126
                  589******************************************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.572142IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-22150IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-20142IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-17323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-171042IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-172338IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.53141135IPR002487Transcription factor, K-box
PfamPF014863.0E-1941122IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGRGKIEIKK IENATNRQVT YSKRRNGLFK KAQELTVLCD AKRMEENYRR LKEINKKLRR  60
EIRQRMGGDL NELNIKELQA LEAKMDSSLL AIRERKYHVI KTQTDKHKKK VRNLEERHAN  120
LVMDLEAKLD GQDGIVETGG YYESTMGLLP NAASNLYALR LYQNQQPPLV LHDGTNDLRL  180
A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.221660.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556460.0KC155646.1 Gossypium hirsutum MADS box protein MADS51 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724764.11e-121PREDICTED: floral homeotic protein PMADS 1-like isoform X1
SwissprotQ003J22e-70TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A1U8MGT31e-120A0A1U8MGT3_GOSHI; floral homeotic protein PMADS 1-like isoform X1
STRINGGorai.003G011500.11e-116(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52612750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.15e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]