PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1589
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 290aa    MW: 32572.5 Da    PI: 9.1241
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1589genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1054.6e-3357112359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                   vrYkeClkNhAa++Ggh+vDGCgEfmps geegt+aa+kCaAC+CHRnFHR+e + 
  Gh_A02G1589  57 VVRYKECLKNHAATMGGHVVDGCGEFMPS-GEEGTMAAMKCAACECHRNFHRKEING 112
                  589*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2158113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-3058110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-3059110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.38360109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.67E-19167234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-29169235IPR009057Homeodomain-like
TIGRFAMsTIGR015655.5E-27173230IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MELRDQDKEM GLPLPLSSSQ TPNPRPPQTL NHYPNIDPVP PGSVAGAEPE PVGSSLVVRY  60
KECLKNHAAT MGGHVVDGCG EFMPSGEEGT MAAMKCAACE CHRNFHRKEI NGESQYIPPL  120
PRRNGVVHLQ QQPVRFPAPV MMSFGGGGGG TAEESSSEDL RHDELINVPQ SSKKRFRTKF  180
SQDQKEKMME FAETLGWRIQ KQDEHELQMF CSQVGVKRQV FKVWMHNNKQ AMKKKQIGKI  240
SSAVTKTKIK TQIYLKMLCC FCWLFSYFSQ NSLVLKRGIA MGNVWLSKEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-221722311675ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469414.11e-177PREDICTED: zinc-finger homeodomain protein 6-like
RefseqXP_017642862.11e-177PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW72e-65ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A0D2MHX90.0A0A0D2MHX9_GOSRA; Uncharacterized protein
STRINGGorai.003G014100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65152543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-62homeobox protein 24