PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1546
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 678aa    MW: 73919.7 Da    PI: 7.197
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1546genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-094715081954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Gh_A02G1546 471 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 508
                  664559******************************88 PP
2BELL94.31.1e-303484021872
         BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +Vd+rY++y+eq+qtv++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdai++q+
  Gh_A02G1546 348 KVDRRYNHYCEQMQTVVNSFDLVMGYGAAIPYTALAQKAMSRHFRCLKDAISSQL 402
                  7***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-65270400IPR006563POX domain
PfamPF075261.4E-39276399IPR006563POX domain
PROSITE profilePS5007112.455449512IPR001356Homeobox domain
CDDcd000861.12E-12452513No hitNo description
SMARTSM003891.2E-9452516IPR001356Homeobox domain
SuperFamilySSF466892.82E-17453519IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-29455518IPR009057Homeodomain-like
PfamPF059203.3E-18469508IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MASQGYHHHH HHHHQAAAGI FSFSNGFERS AINHQEQQQQ LVQQIRRDKL RVQGFEPPPP  60
PLVGIEEEES NALPVYESTG MLLSEMFYFP SSVTVTAAST ELLDQSLQAN YRGQLGESKN  120
DRDSLAQQQQ LPSINADSAA AMHLFLMNPQ TRSPSPPPPQ PQPPPRGFHG GAFPPQFTWV  180
PDNSHEGGHG QGQGQGQGQG LSLSLSSLQH LEAAKLYYNQ GGATGGADGG GGSSATATAQ  240
FQYKHDHHSP HQPLGLVQNH QVHVGYNSSL GMVNALRNSK YTKPAQELLE EFCSVGSGRF  300
KKKKLGKNNI NPSSNPSNDG TTTNGSSSST KDLPPFSASD RIEHQRRKVD RRYNHYCEQM  360
QTVVNSFDLV MGYGAAIPYT ALAQKAMSRH FRCLKDAISS QLKHSCELLG EKDGVGTSGI  420
TKGETPRLRM LEQSLRQQKA FHQIGMMEHE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS  480
DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ ESKEGGDNNK GTRTNNNAAQ  540
TSTPSTTAVG GAGGASPPPQ PPENDPSLIG TNTTQCFSEN QLTNTGTSTT NTSTATEVTP  600
PVSDSDIHQR LLAVTDDTCH RGSNNIVGTI TADNTDIGST LIRFGTTGGD VSLTLGLRHA  660
GNMPDKASSF SVTDFEGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16458516563Homeobox protein Meis2
3k2a_B2e-16458516563Homeobox protein Meis2
4xrm_A2e-16458516563Homeobox protein Meis2
4xrm_B2e-16458516563Homeobox protein Meis2
4xrs_A2e-16458515158Homeobox protein Meis1
4xrs_B2e-16458515158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6225440.0JX622544.1 Gossypium hirsutum clone NBRI_GE69320 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016729525.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ94KL51e-150BLH4_ARATH; BEL1-like homeodomain protein 4
SwissprotQ9SW801e-150BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A1U8MRT00.0A0A1U8MRT0_GOSHI; BEL1-like homeodomain protein 4
STRINGGorai.003G018100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-133BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]