PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1527
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 575aa    MW: 65343.3 Da    PI: 8.9047
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1527genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-1623113299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  fk+    d+ ++g l +p+kf+++hg++  ++   +l  +sg++W+v+l  +k+ g++++++GW e  +   L+ g  +vF++dg+s+f  +v +f++
  Gh_A02G1527  23 FKII-LQDTIQNGKLGIPRKFVKNHGNSMSSP--AMLSVPSGEVWKVEL--TKCNGKIWFENGWLELSNHYSLEFGHLLVFRYDGNSNF--HVVIFDR 113
                  4544.468899999*********999886665..9999***********..**********************************9999..**99997 PP
2B357.42.6e-18240338296
                  EEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   2 fkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  + v+ ps+v+ s     rl +p +f+++h +++ +s  +tl ++sg++W v+++     kk+ +y+lt GW  Fv++n++++gD + F+l+++ e+++
  Gh_A02G1527 240 LVVMQPSYVGLShskgYRLAIPANFVRKHLMEELCS--ITLCNSSGKTWIVTFKNnqiGKKRTSYLLT-GWGTFVHDNNIRVGDACAFELINSIEKSF 334
                  5566666666554555899**********8787776..9999***********777656666668888.*********************98744445 PP

                  EEEE CS
           B3  93 vvkv 96 
                  +v +
  Gh_A02G1527 335 NVVI 338
                  6555 PP
3B355.97.6e-18400493499
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  vl ps++   +r+ +p  fa+++  k   +k+ +l  ++g+sW v ++    + +  +   ++++GW++F ++n+L++gD++vF+l+   e++++v++
  Gh_A02G1527 400 VLQPSYS---RRMNIPVIFARKYLAK--MHKEAILLLSNGKSWPVIYCQhkiEST--GanAIFGSGWRRFSHDNKLEVGDSCVFELIMAAETSMKVTI 490
                  4433333...4678*********545..3457899999*********76543333..3569**************************88888899999 PP

                  E-S CS
           B3  97 frk 99 
                  ++k
  Gh_A02G1527 491 YKK 493
                  886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2217114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-2318113IPR015300DNA-binding pseudobarrel domain
CDDcd100173.58E-1820112No hitNo description
PROSITE profilePS5086312.99921114IPR003340B3 DNA binding domain
SMARTSM010197.3E-1822114IPR003340B3 DNA binding domain
PfamPF023621.7E-1323113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-23231339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-22234341IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-20237339No hitNo description
SMARTSM010191.6E-15239342IPR003340B3 DNA binding domain
PROSITE profilePS5086313.704243342IPR003340B3 DNA binding domain
PfamPF023621.0E-15251338IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-24388494IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-22390493IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.916394494IPR003340B3 DNA binding domain
CDDcd100172.09E-20395492No hitNo description
SMARTSM010198.2E-17396494IPR003340B3 DNA binding domain
PfamPF023622.6E-16400493IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MASSSYQQGN DHLKFISNSP HFFKIILQDT IQNGKLGIPR KFVKNHGNSM SSPAMLSVPS  60
GEVWKVELTK CNGKIWFENG WLELSNHYSL EFGHLLVFRY DGNSNFHVVI FDRTATEILY  120
PYTRYNHIHR RSNIDKSKDD DSTPNLEDIS TSRKLREKSQ MPCPQPCKMM HSTNSAIKTE  180
IECNGKSEFL AQQIRYEGCP ARNDDKSTRH RIIQQLKPHE KDDALERASK TFKSENPFFL  240
VVMQPSYVGL SHSKGYRLAI PANFVRKHLM EELCSITLCN SSGKTWIVTF KNNQIGKKRT  300
SYLLTGWGTF VHDNNIRVGD ACAFELINSI EKSFNVVIYQ GPHTKCYQSL SSTDIIRPMK  360
RKDQSYASPS GSETLTALEK AKAFQVASAF KSEYPFFISV LQPSYSRRMN IPVIFARKYL  420
AKMHKEAILL LSNGKSWPVI YCQHKIESTG ANAIFGSGWR RFSHDNKLEV GDSCVFELIM  480
AAETSMKVTI YKKQAVKDSS LADNSREKQV ELHESSVIGT KSALMNEKED MFNLLLDYNC  540
DASGETLDDI LMSNISSPGK ALEEASQSYQ SFTRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1536649217141B3 domain-containing transcription factor VRN1
4i1k_B3e-1536649217141B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5782021e-125JX578202.1 Gossypium hirsutum clone NBRI_GE10175 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644895.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2MI580.0A0A0D2MI58_GOSRA; Uncharacterized protein
STRINGGorai.003G020000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-41B3 family protein