PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1493
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 171aa    MW: 18966.1 Da    PI: 9.832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1493genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-171968255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Gh_A02G1493 19 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 68
                 59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.971976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-301977IPR001471AP2/ERF domain
SMARTSM003806.2E-371982IPR001471AP2/ERF domain
PRINTSPR003672.6E-112031IPR001471AP2/ERF domain
PfamPF008476.1E-112068IPR001471AP2/ERF domain
CDDcd000182.03E-262078No hitNo description
SuperFamilySSF541716.02E-212077IPR016177DNA-binding domain
PRINTSPR003672.6E-115878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MENGTGVVAG SRKSSTERPY KGIRMRKWGK WVAEIREPNK RSRIWLGSYS TPVAAARAYD  60
TAVFYLRGPS ARLNFPDLLT GEKIGCGGGG DLSAASIRKK AIEVGARVDA LEAAAAHHHH  120
HHHHHHHHHH GHSYNGGDYG DELKPRNGGF LNRVDLNKMP DPEDSDGEWL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-142076663ATERF1
3gcc_A2e-142076663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.30952e-77ovule
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3934851e-140GQ393485.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0450 SSR marker CGR5453 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719099.11e-123PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9FH946e-63ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A1U8M0N21e-122A0A1U8M0N2_GOSHI; ethylene-responsive transcription factor RAP2-10-like
STRINGGorai.003G026100.11e-95(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.13e-59DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]