PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1449
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 905aa    MW: 98870.9 Da    PI: 9.1148
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1449genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-10618668146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                      +++WT+eE+  l+ +v ++G+g W+ I +          R+  ++k++w++
      Gh_A02G1449 618 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 668
                      79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF536332.9E-4082324IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042373.28E-12083444IPR033719N-acetylglutamate synthase, kinase-like domain
HamapMF_01105139.81484596IPR010167Amino-acid N-acetyltransferase
Gene3DG3DSA:3.40.1160.109.4E-6399322IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006965.6E-11115314IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.109.4E-63398444IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.51E-7399446IPR001048Aspartate/glutamate/uridylate kinase
TIGRFAMsTIGR018902.3E-65404596IPR010167Amino-acid N-acetyltransferase
PROSITE profilePS5118618.329443598IPR000182GNAT domain
SuperFamilySSF557292.96E-21453600IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.302.2E-32454595IPR016181Acyl-CoA N-acyltransferase
CDDcd043014.41E-10491553No hitNo description
PfamPF005834.7E-9495567IPR000182GNAT domain
PROSITE profilePS5129411.829613674IPR017930Myb domain
SuperFamilySSF466895.46E-15615683IPR009057Homeodomain-like
SMARTSM007177.0E-8617672IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-13617669IPR009057Homeodomain-like
PfamPF002492.5E-7618668IPR001005SANT/Myb domain
CDDcd116601.76E-18619670No hitNo description
SMARTSM005264.6E-13727794IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.159728799IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.37E-14729805IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-12734801IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.4E-8736792IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006526Biological Processarginine biosynthetic process
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0004042Molecular Functionacetyl-CoA:L-glutamate N-acetyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MATAAKSNPH HQPWNSRQGV CSSCCNKQGF KGFVRFKRSM FFNQGFQGML SRSVVNGEAK  60
TINVCCCCCS LEKVYDVAEE DRRFVAALRE AQSYVYLHRG STFVLLLSAE IVASSYLDAI  120
LKDIAFLHHL GIKFVIVPGT HVQIDKLLAE RGHEPKYYGR YRITDSESLA AATEAAGGIR  180
LMIEAKLSPG PSICNVRRHG DSSRWHEVGV SVASGNFLAA KRRGVVEGVD YGATGEVKKV  240
DVARLRERLD GGCIVILSNL GYSSSGEVLN CNTYEVATAC ALALGADKLI CIIDGPILDE  300
NGRLISFLPL QEADMLIRQR VKQSEIAAKY VKAVGEEDLT CIGHDDTSSV VHSLQNGKAL  360
NSIRNPTFQN GVGFDNGNGL WSGEQGFAIG GQERLSRDNG YLSELAAAAF VCRGGVQRVH  420
LLDGTIGGVL LLELFKRDGM GTMVASDLYE GARMAMVTDL AGIRQIIQPL EESGTLVRRS  480
DEELLKALDS FVVMEREGQI IACAALFPFF KEKCGEVACI AVSPDCRGQG QGDKLLDYVE  540
KKASSLGLDM LFLLTTRTAD WFVRRGFTEC TINMIPEERR KKINLSRKSK YYMKKLIPDR  600
SGITADKAFK NLLMGAPKQK WTAEEEAALK AGVLKHGTGK WRNILSDPEF SSVLRSRSNV  660
DLKDKWRNIN ATAIWGSRQK AKLALKRNQL AAKHDDNPMA LITVPPTEEV VDPKPLAISS  720
GTPRVTGPKK PVSRLENILL EAITSLREPG GSDRASIALY IEEKYAAPLN LKKLLATKLK  780
LLVANGTLTK VKHKYRIAPH STISETRSPL LALEGRQKDS SKSEKKAINI LTKTQVDVEL  840
SKMKTMTAEE AAAAAARAVA EAEFAIAEAE KAAREADAAE AEAEAAKIFA KAAAKALKSR  900
MLVTW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2r8v_A2e-578459627454Putative acetylglutamate synthase
2r98_A2e-578459627454Putative acetylglutamate synthase
3b8g_A2e-578459627454Putative acetylglutamate synthase
3d2m_A2e-578459627454Putative acetylglutamate synthase
3d2p_A2e-578459627454Putative acetylglutamate synthase
3d2p_B2e-578459627454Putative acetylglutamate synthase
4i49_A2e-578459627454Amino-acid acetyltransferase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1579595RKKINLSRKSKYYMKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.215000.0boll
Functional Description ? help Back to Top
Source Description
UniProtN-acetylglutamate synthase involved in arginine biosynthesis. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1889620.0GU188962.1 Gossypium hirsutum N-acetylglutamate synthase protein (NAGS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627074.10.0PREDICTED: probable amino-acid acetyltransferase NAGS2, chloroplastic isoform X1
SwissprotB5X4Z40.0NAGS2_ARATH; Probable amino-acid acetyltransferase NAGS2, chloroplastic
TrEMBLA0A0D2MIQ70.0A0A0D2MIQ7_GOSRA; Uncharacterized protein
STRINGGorai.003G030900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.22e-65MYB_related family protein
Publications ? help Back to Top
  1. Ferrario-Méry S,Besin E,Pichon O,Meyer C,Hodges M
    The regulatory PII protein controls arginine biosynthesis in Arabidopsis.
    FEBS Lett., 2006. 580(8): p. 2015-20
    [PMID:16545809]