PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1392
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 502aa    MW: 55390.2 Da    PI: 6.8297
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1392genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-11221277155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  Gh_A02G1392 221 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 277
                  57*******************4444.2344336655.779999**************98 PP
2AP249.97.9e-16320371155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Gh_A02G1392 320 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 371
                  57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-9221277IPR001471AP2/ERF domain
CDDcd000187.92E-20221287No hitNo description
SuperFamilySSF541715.04E-15221286IPR016177DNA-binding domain
PROSITE profilePS5103217.649222285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-12222285IPR001471AP2/ERF domain
SMARTSM003807.0E-23222291IPR001471AP2/ERF domain
PRINTSPR003672.7E-6223234IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18320381IPR016177DNA-binding domain
CDDcd000182.05E-11320381No hitNo description
PfamPF008473.3E-10320371IPR001471AP2/ERF domain
PROSITE profilePS5103219.111321379IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18321380IPR001471AP2/ERF domain
SMARTSM003803.8E-31321385IPR001471AP2/ERF domain
PRINTSPR003672.7E-6361381IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MAPATVSNWL SFSLSPMEML RSSSEPQFVS YEGSSAATAS AASPHYLIDN FYANDWTNPK  60
HQTQQPAMAA DESPILSSFH HHQVPKLEDF LGDSSSIVRY SDNSQTETQD SSLTHLTQIY  120
DHHNVGAAAY FNDHQDLKAI TGFQAFSTNS GSEVDDSASM GRTQLAAVEF PGHSNCPTAG  180
SLSLGVNQAS EINTTTTNKA VVSVDSDCSK KIVDTFGQRT SIYRGVTRHR WTGRYEAHLW  240
DNSCRREGQA RKGRQGGYDK EEKAARAYDL AALKYWGPTA TTNFPITNYS KELEEMKHVT  300
KQEFIASLRR KSSGFSRGAS IYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE  360
AYDIAAIKFR GINAVTNFEM SRYDVEAIAK SSLPIGGAAK RLKISLESEQ KPVVVNHEQQ  420
PQCSSNSNIS FAPIQQSIST IPCGIPFDAA AFYQQNLYHH LQASNISISD LPGSSSTMTT  480
TPTTLMSQPT ADQFFLWPHQ SY
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616413.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_017616423.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1U8NPA20.0A0A1U8NPA2_GOSHI; AP2-like ethylene-responsive transcription factor AIL6
STRINGGorai.003G037100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]