PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G1312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 370aa MW: 40084.1 Da PI: 5.6237 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.8 | 4.3e-21 | 157 | 206 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+tae+Aa+a+++a+++++g Gh_A02G1312 157 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEDAARAYDEAALRFRG 206 7********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-14 | 157 | 206 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-37 | 157 | 220 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-33 | 157 | 215 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-23 | 157 | 215 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.515 | 157 | 214 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-12 | 158 | 169 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.03E-29 | 165 | 216 | No hit | No description |
PRINTS | PR00367 | 5.4E-12 | 180 | 196 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MYQLMMMREE GSSSAAVAEA VPSSSLMLSD VCREREMSVM VSALTQVVAG DVPADDEELS 60 GNEYLDWRSN NINSSLGFGG LKRGREEVDG CATGSGGGGR MAVESVANLC SQFVHLPHGG 120 SSSAVAGVRE ANTPAQLVPT YEYNSNENNN REEPRRRYRG VRQRPWGKWA AEIRDPFKAA 180 RVWLGTFDTA EDAARAYDEA ALRFRGNKAK LNFPENVKLR SVPPNQTATH FPISDSPNTL 240 FSIPTSADPI IHHSQSHYLV PNPQVAGGYL DYSQLVLGSS TSSVPREQQL QQLRQNQPIY 300 PYDRTVLSSS ESSQAQSSSL SSSSPASPPT SYPIVFPLQA SGCQFNLGNS SQGGGIGDFS 360 VHSWSSDSNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-24 | 156 | 217 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15809 | 0.0 | ovule |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP259809 | 0.0 | KP259809.1 Gossypium barbadense ethylene-responsive element binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016711127.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A1U8L949 | 0.0 | A0A1U8L949_GOSHI; ethylene-responsive transcription factor ABR1-like | ||||
STRING | Gorai.003G048800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 5e-28 | ERF family protein |