PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G1304 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 24945.1 Da PI: 8.4774 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.6 | 1.1e-32 | 138 | 196 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Gh_A02G1304 138 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 196 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.5E-34 | 123 | 196 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-29 | 130 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.585 | 133 | 198 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-37 | 138 | 197 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 139 | 195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSQQAMLNQE LFEEKEMPQM GFFTFPQTLT SYPPSFSCLK AFNIVPPPAN LTETLFSHPK 60 HREEDSASDF AGPQLLSLHS STPNLWEWGE VNECLGTKKS SGDDHLGVSA IKMKRIKGRR 120 KVREPRFCFK TMSDVDVLDD GYKWRKYGQK VVKNTQHPRS YYRCTQDNCR VKKRVERLAE 180 DPRMVITTYE GRHAHSPSHD SEDSQHPYSH LNNFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-27 | 129 | 195 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 8e-27 | 129 | 195 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15890 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669807 | 0.0 | KF669807.1 Gossypium hirsutum WRKY transcription factor 21 (WRKY21) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017622567.1 | 1e-164 | PREDICTED: probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 9e-57 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A0D2MJB7 | 1e-155 | A0A0D2MJB7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G048100.1 | 1e-156 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6106 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 4e-59 | WRKY DNA-binding protein 13 |