PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1241
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 323aa    MW: 35943.4 Da    PI: 7.0205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1241genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12122172154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +r+ h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i   A++++k L
  Gh_A02G1241 122 QRMIHIAVERNRRRQMNDYLAVLRTMMPNS---YVQRGDQASIIGGAINFVKVL 172
                  6999**************************...9***************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.23E-13120177No hitNo description
SuperFamilySSF474594.84E-16121186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.437121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11123185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-9127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MALEAVVFQQ DPFCYGGSGP CNTYGVGFQQ QEENANYSNN GEMVSKSGGG GTRGSSSSSF  60
MMHQTLKEWP WDFNSSSSPD IGFTTGGPIF SPTEAPAIDT RSCRRRRRRP KSVKNKEEIE  120
NQRMIHIAVE RNRRRQMNDY LAVLRTMMPN SYVQRGDQAS IIGGAINFVK VLEQILQSLE  180
ARKRMEKRSD ITTFSSLFSD FFSFPQYSTS IQTETPGEPP AEKGSFPSCS SSSSVADVEV  240
TMVDSHANVK ILSKKHPKQL FNMVSGLYSL GLFVLHLNVT SVENRVLYSL SVKVEENCQL  300
NTVNEIAAAV YEMVDKFQEE AAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RSCRRRRRR
2122133RMIHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622558.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLA0A2P5YVM30.0A0A2P5YVM3_GOSBA; Uncharacterized protein
STRINGGorai.003G041800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2217045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-69bHLH family protein