PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1061
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 432aa    MW: 47879.3 Da    PI: 8.5905
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1061genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.83.5e-1064133155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng.........kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++  n+          +   +++  g ++ +e Aa+a++ a++k++g
  Gh_A02G1061  64 SIYRGVTRHRWTGRYEAHLWDkSTWnqNQnkkgkqglsAClsfQHIFSGAYDDEEAAARAYDLAALKYWG 133
                  57*******************777775227799887762266888888********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-664133IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1164142IPR016177DNA-binding domain
PROSITE profilePS5103217.2865141IPR001471AP2/ERF domain
SMARTSM003801.8E-1765147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-1265142IPR001471AP2/ERF domain
PRINTSPR003674.3E-56677IPR001471AP2/ERF domain
PRINTSPR003674.3E-5123143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MASTSSSDPG MKAEASGGEN SETVIANDQL LLCRGLKKAK KERGCTAKER ISKMPPCTAG  60
KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQGL SACLSFQHIF SGAYDDEEAA  120
ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNVSREDY LASLRRKSSG FSRGISKYRG  180
LSSRRWDSSF GRVSGSEYFN SIHYGDDTTK ENDYIGGFCI ERKIDLTGYI KWWGTNKTRQ  240
AEAGTKSSEE TKNACPEDIG SELKTSEWAV QPTEPYQMPR LGTSLEGTKC KGSSVSALSI  300
LSRSADFKSL QEKALKKQEQ NSDSDENENK NTINKMDHGK AAEKSVNHDT GGDRLGAAMG  360
MTGGLSSLQK NVYPLTPFLS VPLLTNYNTI DSLVDPVLWT SLVPALPTGP SRNPEVTKTE  420
TSSTYTFFRP EE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.47440.0boll
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721852.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-166AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1U8M4W80.0A0A1U8M4W8_GOSHI; AP2-like ethylene-responsive transcription factor At2g41710
STRINGGorai.003G091500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-163AP2 family protein