PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A02G1042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 279aa MW: 31899.6 Da PI: 6.516 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 6.2e-30 | 134 | 191 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +D ++WrKYGqK++kgs+fprsYYrC+s+ gC ++k+vers++dp+v++i Y+ eH h Gh_A02G1042 134 SDVWAWRKYGQKPIKGSPFPRSYYRCSSSkGCLARKQVERSSSDPRVFIISYTAEHCH 191 69*************************998**************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-30 | 119 | 194 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.983 | 128 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-25 | 129 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-35 | 133 | 193 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-24 | 135 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MENWDLQAVV GGNSSNDHPT ENPEFSFGPW SFQQDEDFVR FPGIFETNPK VLDELEQLYK 60 PFYPDLNPFS TQTIITSSIP VPLHVDEPAE KRKKKQSFTV SQSDISASPK PRRFSRKNQQ 120 NRVVEHVTAD DLPSDVWAWR KYGQKPIKGS PFPRSYYRCS SSKGCLARKQ VERSSSDPRV 180 FIISYTAEHC HGHPTRRSSL AGSTRSKPLT AAKSIEAHAE GETVKQERMK MEVQLHGEEE 240 GGKILSPDLL LSDDELIRRL ENFDEGFFVD QFPHFSHEM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-18 | 121 | 194 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF669784 | 0.0 | KF669784.1 Gossypium hirsutum WRKY transcription factor 19 (WRKY19) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016742894.1 | 0.0 | PREDICTED: probable WRKY transcription factor 29 | ||||
Swissprot | Q9SUS1 | 1e-53 | WRK29_ARATH; Probable WRKY transcription factor 29 | ||||
TrEMBL | A0A1U8NY33 | 0.0 | A0A1U8NY33_GOSHI; probable WRKY transcription factor 29 | ||||
STRING | Gorai.003G085500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6090 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23550.1 | 5e-56 | WRKY family protein |