PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G1005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 327aa MW: 36889 Da PI: 5.715 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.2e-19 | 112 | 163 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++++GVr+++ +g+W+AeIrdp r r +lg++ taeeAa +++a+ +l+g+ Gh_A02G1005 112 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYNTAEEAAMVYDKAAIQLRGH 163 59********.**********72....45**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.26E-31 | 112 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 113 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-36 | 113 | 176 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-12 | 113 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-21 | 113 | 170 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.261 | 113 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-10 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-10 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MDPCSVSLIK YTEHRNETKL LSPLVNGRVE NKPEMKPRIV RISVTDADAT DSSSDDEEET 60 RMIRRRSRNR VKKFVNEITI ESTNPTESRC VRKKPAAEKL KVKAAAKVPA GKKFRGVRQR 120 PWGKWAAEIR DPLRRVRLWL GTYNTAEEAA MVYDKAAIQL RGHDALTNFT TPPMKDENIS 180 QKQLSSSDYN SGEESHNSYL CSPTSVLRCP SLSIDEVDSQ SFEKSRETRN RPRDVPDDSC 240 CISGENLSDF SEHSSLFAGD IFSSVPSLFD DHTSLHEGFL KDDFGYGYLS SGGDFEFGFG 300 TFSSWQYVDD HFQDIGDLFG SDPPLAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 111 | 169 | 3 | 62 | ATERF1 |
3gcc_A | 1e-20 | 111 | 169 | 3 | 62 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23737 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016742796.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A1U8NUZ1 | 0.0 | A0A1U8NUZ1_GOSHI; ethylene-responsive transcription factor CRF1-like | ||||
STRING | Gorai.003G082200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 3e-56 | cytokinin response factor 2 |