PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0979
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 696aa    MW: 77882 Da    PI: 6.6383
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0979genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-24131231198
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+kvlt sd++++g +++ +k+a+e+     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+
  Gh_A02G0979 131 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENGELR 226
                  99****************************9555556679************************************************..449999** PP

                  EEEE- CS
           B3  94 vkvfr 98 
                  v+v+r
  Gh_A02G0979 227 VGVRR 231
                  ***98 PP
2Auxin_resp105.18.2e-35257336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+st++ F v+Y+Pr+  s+F++ ++k+++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p  W++SkWrsLk
  Gh_A02G0979 257 ASHAVSTQTLFVVYYKPRT--SQFIIGLNKYLEALSNKFTVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-YWKDSKWRSLK 336
                  789***************6..9*************************************************.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-40119260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-41124246IPR015300DNA-binding pseudobarrel domain
CDDcd100174.78E-21129231No hitNo description
PROSITE profilePS5086312.351131233IPR003340B3 DNA binding domain
PfamPF023622.2E-22131231IPR003340B3 DNA binding domain
SMARTSM010197.5E-24131233IPR003340B3 DNA binding domain
PfamPF065073.3E-32257336IPR010525Auxin response factor
PfamPF023092.3E-7548619IPR033389AUX/IAA domain
SuperFamilySSF542771.77E-15576659No hitNo description
PROSITE profilePS5174528.257583664IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2408.0E-4606657No hitNo description
PfamPF023093.1E-7629668IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MANRGGVFSQ TNNVSSEVIG NGGDDLYMEL WKLCAGPLVE APRARERVYY FPQGHMEQLE  60
ASTNQELNQR IPLFNLPSKI LCSVVHIQFL AEQETDEVYA QITLMPEPNQ PEPTTPDACL  120
PEPPKPTVHS FCKVLTASDT STHGGFSVLR KHATECLPPL DMNQATPTQE LVAKDLHGYE  180
WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDSFVFLRG ENGELRVGVR RVAHQQSSMP  240
TSVISSQSMH LGVLATASHA VSTQTLFVVY YKPRTSQFII GLNKYLEALS NKFTVGMRFK  300
MRFEGEDSPE RRFSGTIVGV EDFSPYWKDS KWRSLKVQWD EPASIPRPDR VSPWEIEPFA  360
APIPPTLGQP VAAKNKRPRP TAEIPALDLS STASAPWNSG VMHTHDLMRR NITAEANRNE  420
NHVIWHMQTE MSSSCTSVLK TQNEGSWLSS PCMSVSKHRF PDARDDSKCA SGWPVLSGLS  480
NPQVNNDSTF DPKEKVKKSE TASSCRLFGI ELINHSASSR QLERTPTQLS TMTASTAEGH  540
HTLSPNNSCQ KSEISKDSNE KQEQLQLQAK EIQSRQSCPS STRSRTKVQM QGVAVGRAVD  600
LAMLEGYDQL IDELEEMFDI KGELRPRNKW EIVYTDDEGD MMLVGDDPWQ EFCSMVRRIF  660
ICLSQDVKKL STGSKLPMAC IEGGEGTVIS SESIEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17783591355Auxin response factor 1
4ldw_A1e-17783591355Auxin response factor 1
4ldw_B1e-17783591355Auxin response factor 1
4ldx_A1e-17783591355Auxin response factor 1
4ldx_B1e-17783591355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375379KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.199570.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5850152e-61JX585015.1 Gossypium hirsutum clone NBRI_GE18462 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741602.10.0PREDICTED: auxin response factor 9-like isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1U8NRI70.0A0A1U8NRI7_GOSHI; Auxin response factor
STRINGGorai.003G078000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9