PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0925

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 992aa MW: 108971 Da PI: 5.4209

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0925	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.5e-29	601	652	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Gh_A02G0925 601 AEKNVSLSVLQRYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 652 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.256	584	672	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-25	604	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-22	886	976	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-24	889	971	No hit	No description
SMART	SM00666	1.5E-22	892	974	IPR000270	PB1 domain
PROSITE profile	PS51745	23.373	892	974	IPR000270	PB1 domain
Pfam	PF00564	2.9E-17	893	971	IPR000270	PB1 domain
CDD	cd06407	1.19E-30	893	971	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MKKMELPFSS KEKGHGYWVP PRAQMEGGEQ FDGTARNLVS EDPFSFSELM NFDSYAGWCN 60 SPAAIDQTFA SFGLSSYPPL PYTSFDTLHI TGPSSGTFAE AGDALSGMDS SYNFADRMVY 120 QQADAHFGNP LDSADGELGG RQNNGGTRQS NSLVLANSLV SRSIKRSLDE RMLRALSLFK 180 ESSGGGILAQ VWVPIKHGDQ YMLTTSNQPY LLDQMLSGYR EVSRTYAFPA ELKPGSFPGL 240 PGRVFISRVP EWTSNVIHYS KVEYLRFAHA INHKVRGSIA LPIFEPSEMS CCAVLELVTM 300 KEKHNFDSEI ENVSIALQAV NLRTTAPPRL LPQCLSRNQR AALGDIADVL RAVCHAHRLP 360 LALTWIPCNY TEEAADETTK LRVRDGDTDR DGKCVLCIED TTCYVNDKGM QDFVHACIEH 420 YLEEGQGIAG KALQSNHPFF SADVKTYDIN DYPLVHHARK FNLNAAVAIR LRSTYTGDDD 480 YILEFFLPVT MKGSSEQQLL LSNLSGTMQR ICRSLRTVSD VEISGEGSNV EFQSGTVPNF 540 PLTSMSRSSE TVLSADSERN SHDRVPLNAS NATSDGKETD GPPEQAMTRP WRHVEKKRNT 600 AEKNVSLSVL QRYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ 660 TVLDSVQGVE GGLKFDPATG AFVAAGNVIQ EADTRKTLVF SNRNLPTRVP EPVNQEKSSA 720 PLASCPDGEN SVVKLEEDEC SVGGNNRDAI RSVLIQSTLD SKSVGPDLRS FQAASFGTAT 780 WTCPENATTD SYVGGGQRWG FNEGNPKVED SDCHFVSGSS SSLAAAADDE IDTRMEGDDG 840 IVEHNHQPIS SSMTDSLNGS GSMLHRSSSS SQSFEDAEDT KPKTISVDSS SKITVKATYK 900 DDTVRFKFKP SAGCFQLYEE VAKRFKIQIG TFQLKYLDDE EEWVLLVSDS DLLECLEILE 960 YIGSRSLKFQ VCDIPCTMGS SGSSNCFLTG GS

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MKKMELPFSS KEKGHGYWVP PRAQMEGGEQ FDGTARNLVS EDPFSFSELM NFDSYAGWCN  60
SPAAIDQTFA SFGLSSYPPL PYTSFDTLHI TGPSSGTFAE AGDALSGMDS SYNFADRMVY  120
QQADAHFGNP LDSADGELGG RQNNGGTRQS NSLVLANSLV SRSIKRSLDE RMLRALSLFK  180
ESSGGGILAQ VWVPIKHGDQ YMLTTSNQPY LLDQMLSGYR EVSRTYAFPA ELKPGSFPGL  240
PGRVFISRVP EWTSNVIHYS KVEYLRFAHA INHKVRGSIA LPIFEPSEMS CCAVLELVTM  300
KEKHNFDSEI ENVSIALQAV NLRTTAPPRL LPQCLSRNQR AALGDIADVL RAVCHAHRLP  360
LALTWIPCNY TEEAADETTK LRVRDGDTDR DGKCVLCIED TTCYVNDKGM QDFVHACIEH  420
YLEEGQGIAG KALQSNHPFF SADVKTYDIN DYPLVHHARK FNLNAAVAIR LRSTYTGDDD  480
YILEFFLPVT MKGSSEQQLL LSNLSGTMQR ICRSLRTVSD VEISGEGSNV EFQSGTVPNF  540
PLTSMSRSSE TVLSADSERN SHDRVPLNAS NATSDGKETD GPPEQAMTRP WRHVEKKRNT  600
AEKNVSLSVL QRYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ  660
TVLDSVQGVE GGLKFDPATG AFVAAGNVIQ EADTRKTLVF SNRNLPTRVP EPVNQEKSSA  720
PLASCPDGEN SVVKLEEDEC SVGGNNRDAI RSVLIQSTLD SKSVGPDLRS FQAASFGTAT  780
WTCPENATTD SYVGGGQRWG FNEGNPKVED SDCHFVSGSS SSLAAAADDE IDTRMEGDDG  840
IVEHNHQPIS SSMTDSLNGS GSMLHRSSSS SQSFEDAEDT KPKTISVDSS SKITVKATYK  900
DDTVRFKFKP SAGCFQLYEE VAKRFKIQIG TFQLKYLDDE EEWVLLVSDS DLLECLEILE  960
YIGSRSLKFQ VCDIPCTMGS SGSSNCFLTG GS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22182	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016741849.1	0.0	PREDICTED: protein NLP8-like
Refseq	XP_016741850.1	0.0	PREDICTED: protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1U8NSN9	0.0	A0A1U8NSN9_GOSHI; protein NLP8-like
STRING	Gorai.005G126000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]