PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G0783 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 297aa MW: 33446.3 Da PI: 9.1018 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 111 | 160 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f tae+Aa a+++a+ kl+g Gh_A02G0783 111 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEQAALAYDKAAYKLRG 160 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.38E-34 | 110 | 170 | No hit | No description |
PROSITE profile | PS51032 | 23.38 | 111 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-22 | 111 | 169 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-38 | 111 | 174 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-33 | 111 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 112 | 123 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-13 | 112 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MEALEPFMKS ASSSSPSPSY NSLSSSQTQA TFYPAFSGLQ EPQPGSTIGL NNLDQAQSNQ 60 VQAQFHFQTY HPSYLYQNPQ PSFSSNHMVR FLSPKPVSMK QMGSPPKPTK LYRGVRQRHW 120 GKWVAEIRLP KNRTRLWLGT FETAEQAALA YDKAAYKLRG DSARLNFPNL RHQGSHIGEY 180 KPLHSSVDAK LQAICESLEQ DQKQGNKKKT SKEMKKDKVQ VATPEPEEKT VKLENSSSSS 240 SPVVSENEVS AESSPLPDLT FSNLNEHSWP EFGFSSENFM LSKYPSYEID WDSILKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 110 | 168 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613007.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 1e-89 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0D2RBU2 | 0.0 | A0A0D2RBU2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G093500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2716 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 5e-66 | related to AP2 4 |
Publications ? help Back to Top | |||
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