PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0541

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 358aa MW: 39529 Da PI: 6.6755

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0541	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.8	1.1e-33	190	248	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp++v++tYeg+H+h+ Gh_A02G0541 190 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPTIVVTTYEGQHTHP 248 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-35	175	250	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-30	182	250	IPR003657	WRKY domain
PROSITE profile	PS50811	33.247	185	250	IPR003657	WRKY domain
SMART	SM00774	3.6E-40	190	249	IPR003657	WRKY domain
Pfam	PF03106	1.4E-27	191	248	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MEKKNENNPM ANMRFPDEIP SAFGGGGGGS IFDMAGTSCE GSGGDKWGSL GFMDLLGIHQ 60 DFVAPSLFDS FQPSILPPSS PPLPVFHHHD DDILHELHTD SKQQHLNHQA GLLSPASTVP 120 ESSEVLNNPA TPNSSSISSS SNELAANDEQ TKAGDDEDKT KKPLKPKKKN PKRQREPRFA 180 FMTKSDIDHL DDGYRWRKYG QKAVKNSPYP RSYYRCTTAG CGVKKRVERS SDDPTIVVTT 240 YEGQHTHPCP IMPRGAIGIA PDSSAFGAPC FIIPQPMYLN HQQQQQQQQL QPYIYNSTPS 300 LNITTASSNI IHPSFPGFLQ EKPRFSNPNP SALSHRDHGL LQDIVPTPMR TEAKEEDQ

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MEKKNENNPM ANMRFPDEIP SAFGGGGGGS IFDMAGTSCE GSGGDKWGSL GFMDLLGIHQ  60
DFVAPSLFDS FQPSILPPSS PPLPVFHHHD DDILHELHTD SKQQHLNHQA GLLSPASTVP  120
ESSEVLNNPA TPNSSSISSS SNELAANDEQ TKAGDDEDKT KKPLKPKKKN PKRQREPRFA  180
FMTKSDIDHL DDGYRWRKYG QKAVKNSPYP RSYYRCTTAG CGVKKRVERS SDDPTIVVTT  240
YEGQHTHPCP IMPRGAIGIA PDSSAFGAPC FIIPQPMYLN HQQQQQQQQL QPYIYNSTPS  300
LNITTASSNI IHPSFPGFLQ EKPRFSNPNP SALSHRDHGL LQDIVPTPMR TEAKEEDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-28	183	250	10	77	Probable WRKY transcription factor 4
2lex_A	3e-28	183	250	10	77	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2995	3e-81	ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031072	0.0	KF031072.1 Gossypium hirsutum WRKY transcription factor 6 (WRKY6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632267.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	7e-59	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A068LC88	0.0	A0A068LC88_GOSHI; WRKY transcription factor 32
STRING	Gorai.005G068100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	7e-59	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]