PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0518

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 913aa MW: 102919 Da PI: 7.7609

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0518	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.4	4.1e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 ++e k+rwl+++ei+aiL +++ +++++++ + pksg+++L++rk++r+frkDGy+wkkkkdgkt++E+he+LKvg e +++yYah+e+n+tf rrc Gh_A02G0518 29 MEEaKSRWLRPNEIHAILCSHRYFSIQAKPVNMPKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTIKEAHEHLKVGDKERIHVYYAHGEDNSTFVRRC 126 55669******************************************************************************************* PP CG-1 99 ywlLeeelekivlvhylevk 118 ywlL+++le+ivlvhy+e+k Gh_A02G0518 127 YWLLDKSLEQIVLVHYRETK 146 ***************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	72.799	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.5E-72	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.0E-45	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	4.06E-12	361	446	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.34E-18	513	657	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-18	529	659	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.608	531	668	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.0E-8	539	626	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.55E-16	552	656	No hit	No description
PROSITE profile	PS50088	11.968	597	629	IPR002110	Ankyrin repeat
SMART	SM00248	6.0E-6	597	626	IPR002110	Ankyrin repeat
SMART	SM00248	1700	636	665	IPR002110	Ankyrin repeat
SMART	SM00015	380	707	729	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	280	741	763	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0026	783	805	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.237	784	808	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.8E-4	785	805	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	69	863	885	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.785	866	892	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MEDGGCARLV GAEIHGFHTL QDLDVKNMME EAKSRWLRPN EIHAILCSHR YFSIQAKPVN 60 MPKSGTIVLF DRKMLRNFRK DGYNWKKKKD GKTIKEAHEH LKVGDKERIH VYYAHGEDNS 120 TFVRRCYWLL DKSLEQIVLV HYRETKEVSL ATHSNSSSLT DQSTPLLVTE EFDSGIANTY 180 SEEPGESVNV RNHEMKLLEI NTLEWDDLLV TNGANDSIAS RGADNVSCFD QQNQMAVNGF 240 SNYGGLISAH NLSTETSLLV NSIAPVAQSN NAYLGTTGGV CNQISGGQVN TTSQLKDSCA 300 LGTGDSLDFL VNDGLQSQDS FGKWINDFIT EPLGSVGDSV LELSSSSAND SFTSPEQIFS 360 ITEVSPEWAY STEKTKILVI GVFHQAYQHL AKSTLFCVCG DVCTPAEIVQ VGVYRCLLSQ 420 HSPGLANLYM SLDGHKPISQ VLGFEYCTPL SHDPIVPTED ESRREEFHLQ MRLAYLLFST 480 SNSLDILLGN KVSPNTLKGV KKFAQKTSNM SDCWKYLMKS FEENRVSSTQ AKDSLLEIAL 540 KNRLRDWLLE RIIEGGRTNE HDTRGQGVLH LCAILGYTWA IYLYSWSGLS LDFRDKHGWT 600 ALHWAAFYGR EKMVAVLLSA GAKPNLVTDP TTRNPNGYTA ADLASLKGYE GLAAYLSEEA 660 LVAHFNDMAV AGNASGSLQT SRTEATNFEN LNEDELYLKE SLAAYRTAAD AASRIQTAFR 720 VHSLKLRTKA IESSHPEDET RNIVAAMKIQ HAFRNYGIKK KMTAAARIQY SFLTWKMRKD 780 FLNMRRQAIK IQAVFRGFQV RRQYRKILWS VGVLEKAILR WRFKRKGLRG LQINKAEEVA 840 QRSQESDTEE DFFRDGRKQA EERVVKAVVR VQTLFRSKKA QQEYRRMKLA HDIAKLEYEN 900 LLGLPSDMDA CRH

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MEDGGCARLV GAEIHGFHTL QDLDVKNMME EAKSRWLRPN EIHAILCSHR YFSIQAKPVN  60
MPKSGTIVLF DRKMLRNFRK DGYNWKKKKD GKTIKEAHEH LKVGDKERIH VYYAHGEDNS  120
TFVRRCYWLL DKSLEQIVLV HYRETKEVSL ATHSNSSSLT DQSTPLLVTE EFDSGIANTY  180
SEEPGESVNV RNHEMKLLEI NTLEWDDLLV TNGANDSIAS RGADNVSCFD QQNQMAVNGF  240
SNYGGLISAH NLSTETSLLV NSIAPVAQSN NAYLGTTGGV CNQISGGQVN TTSQLKDSCA  300
LGTGDSLDFL VNDGLQSQDS FGKWINDFIT EPLGSVGDSV LELSSSSAND SFTSPEQIFS  360
ITEVSPEWAY STEKTKILVI GVFHQAYQHL AKSTLFCVCG DVCTPAEIVQ VGVYRCLLSQ  420
HSPGLANLYM SLDGHKPISQ VLGFEYCTPL SHDPIVPTED ESRREEFHLQ MRLAYLLFST  480
SNSLDILLGN KVSPNTLKGV KKFAQKTSNM SDCWKYLMKS FEENRVSSTQ AKDSLLEIAL  540
KNRLRDWLLE RIIEGGRTNE HDTRGQGVLH LCAILGYTWA IYLYSWSGLS LDFRDKHGWT  600
ALHWAAFYGR EKMVAVLLSA GAKPNLVTDP TTRNPNGYTA ADLASLKGYE GLAAYLSEEA  660
LVAHFNDMAV AGNASGSLQT SRTEATNFEN LNEDELYLKE SLAAYRTAAD AASRIQTAFR  720
VHSLKLRTKA IESSHPEDET RNIVAAMKIQ HAFRNYGIKK KMTAAARIQY SFLTWKMRKD  780
FLNMRRQAIK IQAVFRGFQV RRQYRKILWS VGVLEKAILR WRFKRKGLRG LQINKAEEVA  840
QRSQESDTEE DFFRDGRKQA EERVVKAVVR VQTLFRSKKA QQEYRRMKLA HDIAKLEYEN  900
LLGLPSDMDA CRH

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017631889.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
Refseq	XP_017631891.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1U8JLL1	0.0	A0A1U8JLL1_GOSHI; calmodulin-binding transcription activator 5-like isoform X1
STRING	Gorai.005G065700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]