PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0465

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1174aa MW: 130973 Da PI: 9.1149

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0465	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.9e-11	47	82	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+eE e++++a +++G++ Wk++a ++ +R+ +++ Gh_A02G0465 47 QWTKEELERFYEAYRKYGKD-WKKVATMIR-NRSVEMV 82 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.626	43	96	IPR017884	SANT domain
SuperFamily	SSF46689	3.96E-11	44	91	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-6	44	92	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-5	47	81	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-9	47	82	IPR001005	SANT/Myb domain
CDD	cd00167	1.24E-7	48	82	No hit	No description
SMART	SM01135	1.0E-56	636	737	IPR033471	DIRP domain
Pfam	PF06584	8.5E-33	636	736	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1174 aa Download sequence Send to blast
MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGKRKRKL SDMLGPQWTK EELERFYEAY 60 RKYGKDWKKV ATMIRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYSVMGGSD 120 SEQESNEGMG VSRKPQKRSR GKIRDQPSKS SDKPLPDLLQ FPSANSSCLS LLKRRRSESR 180 PRAVGKRTPR VPISFSHDKN KGERYFSPIR QGMKLKVDAV DDDVAHEVAL ALTEASQRGG 240 SPQVSRTPNR KAETPSSVIN SERMNADSET TSAKIHGSEV DEDACELSLG STEADNADYA 300 KDKNYSRNIE GTGTVEVQQK GKRYYRRKPE IEESVNHLED TKEACSGTEE GQQLCDFKGK 360 FDCEVEDAKT SRASIKGPRK RSKKVLFEGV EDTAFDALQT LADLSLMMPE TADTESSVQH 420 KEEKNEVDKT KLKGNHLVPG AKGSASKTSR HGKHFGHDVR AIPEAKEAHP ANVGMRKRRQ 480 KSSPYKLQIP KDETDADSQL GESPNIEASG EVKNLLSKGK QSNNFVHPKQ GKFVRPPEHA 540 SSSTDQGRDL NNSAPSTIQV SSVNQVNLPT KIRSKRKTDV RKPAIRKGIK SSDNIVKGKI 600 SGPVTLFHDG ALDLKEKLCN FLCSYQARRW CAFEWFYSTI DYPWFTKREF VEYLDHVGLG 660 HIPRLTRVEW GVIRSSLGKP RRFSEQFLKE EREKLNQYRE SVRRHYAELH AGIGEGLPTD 720 LARPLSVGQR VIAVHPKTRE IHDGSVLTVD YSRYRIQFDS PELGVEFVMD VDCMPLNPME 780 NLPASLSRQN TAIRKFVENY NELKMNGQSK ESKMEENIKF MQCDNLENAN SPSHTSPSTF 840 SVGNLSQPVK VDSSSPNLQL KIGPTETVYT QQAINSQPSA VSLVQAREAD VEALSQLTRA 900 LDKKEAIVSE LRRMNDEVLE NQKGGDNYIK DSDSFKKQYA AVLLQLNEIN EQVSSALLCL 960 RQRNTYQGTS SGKPLKPSGK IGEQGSQLSS FDAMHHVQES VSHVAEIVES SRRKARSMVD 1020 AALQAMSSLR KGGKNIERIE DAIDFVNNQL SLNEFSAPAP RSAAPVDSVR SHDNLTACSS 1080 YPFATSHIPE MKLQNLSDQD ELKIPSDLIS HCVATLLMIQ KCTERQFPPG DVAEVLDSAV 1140 TSLKPCCSQN LPIYTEIQKC MGIIRNQILA LVPT

Sequence ? help Back to Top

Protein Sequence Length: 1174 aa Download sequence Send to blast

MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGKRKRKL SDMLGPQWTK EELERFYEAY  60
RKYGKDWKKV ATMIRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYSVMGGSD  120
SEQESNEGMG VSRKPQKRSR GKIRDQPSKS SDKPLPDLLQ FPSANSSCLS LLKRRRSESR  180
PRAVGKRTPR VPISFSHDKN KGERYFSPIR QGMKLKVDAV DDDVAHEVAL ALTEASQRGG  240
SPQVSRTPNR KAETPSSVIN SERMNADSET TSAKIHGSEV DEDACELSLG STEADNADYA  300
KDKNYSRNIE GTGTVEVQQK GKRYYRRKPE IEESVNHLED TKEACSGTEE GQQLCDFKGK  360
FDCEVEDAKT SRASIKGPRK RSKKVLFEGV EDTAFDALQT LADLSLMMPE TADTESSVQH  420
KEEKNEVDKT KLKGNHLVPG AKGSASKTSR HGKHFGHDVR AIPEAKEAHP ANVGMRKRRQ  480
KSSPYKLQIP KDETDADSQL GESPNIEASG EVKNLLSKGK QSNNFVHPKQ GKFVRPPEHA  540
SSSTDQGRDL NNSAPSTIQV SSVNQVNLPT KIRSKRKTDV RKPAIRKGIK SSDNIVKGKI  600
SGPVTLFHDG ALDLKEKLCN FLCSYQARRW CAFEWFYSTI DYPWFTKREF VEYLDHVGLG  660
HIPRLTRVEW GVIRSSLGKP RRFSEQFLKE EREKLNQYRE SVRRHYAELH AGIGEGLPTD  720
LARPLSVGQR VIAVHPKTRE IHDGSVLTVD YSRYRIQFDS PELGVEFVMD VDCMPLNPME  780
NLPASLSRQN TAIRKFVENY NELKMNGQSK ESKMEENIKF MQCDNLENAN SPSHTSPSTF  840
SVGNLSQPVK VDSSSPNLQL KIGPTETVYT QQAINSQPSA VSLVQAREAD VEALSQLTRA  900
LDKKEAIVSE LRRMNDEVLE NQKGGDNYIK DSDSFKKQYA AVLLQLNEIN EQVSSALLCL  960
RQRNTYQGTS SGKPLKPSGK IGEQGSQLSS FDAMHHVQES VSHVAEIVES SRRKARSMVD  1020
AALQAMSSLR KGGKNIERIE DAIDFVNNQL SLNEFSAPAP RSAAPVDSVR SHDNLTACSS  1080
YPFATSHIPE MKLQNLSDQD ELKIPSDLIS HCVATLLMIQ KCTERQFPPG DVAEVLDSAV  1140
TSLKPCCSQN LPIYTEIQKC MGIIRNQILA LVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	474	479	MRKRRQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016726873.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1U8MMY7	0.0	A0A1U8MMY7_GOSHI; protein ALWAYS EARLY 3 isoform X1
STRING	Gorai.005G058900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]