PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G0430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 279aa MW: 32348.5 Da PI: 9.2887 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.1 | 5.3e-20 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++vk++G g+W+++ar g++R +k+c++rw +yl Gh_A02G0430 21 KGPWTAEEDKLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 74 | 118 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Gh_A02G0430 74 RGQITPHEESIIIELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 118 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.634 | 16 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-31 | 18 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-17 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-18 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-12 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 18.374 | 73 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 9.1E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-14 | 74 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.70E-10 | 78 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MSWAMMAGHL GWGFIEEGWR KGPWTAEEDK LLIEYVKLHG EGRWNSVARL AGLKRNGKSC 60 RLRWVNYLRP DLKRGQITPH EESIIIELHA RWGNRWSTIA RSLPGRTDNE IKNYWRTHFK 120 KKNKLPSDNN TSDLKSKARL LKRQQFQQQQ LLQQQQQQLQ LQQQQEQHEQ QLQLNQLDMK 180 RIMSLLDETE NKSSVLPYVP QLRQEMATAV SYPNTTVEQQ QAGLFYPMMD FDGNVSGSGS 240 DTSNEVDVLW DGLWNLDDIN GNFGATSKVS LHNLATPFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-27 | 21 | 122 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614981 | 3e-67 | JX614981.1 Gossypium hirsutum clone NBRI_GE58733 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017633244.1 | 0.0 | PREDICTED: transcription factor MYB24-like | ||||
TrEMBL | A0A1U8MDI7 | 0.0 | A0A1U8MDI7_GOSHI; transcription factor MYB24-like | ||||
STRING | Gorai.005G054900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 2e-84 | myb domain protein 79 |