PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0164

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 441aa MW: 48276.8 Da PI: 6.1843

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0164	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.8e-09	270	317	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gh_A02G0164 270 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 317 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.75E-11	264	321	No hit	No description
SuperFamily	SSF47459	2.88E-17	264	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	266	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-17	266	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-6	270	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	272	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MEKDKAFISE ELKNRTTTRQ QQPAWNPCGF MTEMSANELN CGTEQVGNYF FNPNWDNSMD 60 QSDPFESALS SMVSSPAASN VGSGENVMMR ELIGRLGNIC NSKDIITNST NVSCYSTPLN 120 SPPFSTDPGF AERAARFSCF GGLNDPLRDS LKLSGHVNGS QTINNSTLSR SSSPENAESG 180 VSKEESSVSE QLPGGNTKKR KSIPRGKAKE TPSPATVDAK VAAENNDESN AKRSKQNGTV 240 KASNKEDSKP AEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT 300 GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRMDVNMET LLSKDMFQSR GLLAHAVYSM 360 EPTFSFGYQP QQGLALNNGI ANTTSQQGFQ LPQVNGFIDG NPQVGSIWED DLQSIVQMGF 420 GQNQAQCYQG SIAPGQVKIE L

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MEKDKAFISE ELKNRTTTRQ QQPAWNPCGF MTEMSANELN CGTEQVGNYF FNPNWDNSMD  60
QSDPFESALS SMVSSPAASN VGSGENVMMR ELIGRLGNIC NSKDIITNST NVSCYSTPLN  120
SPPFSTDPGF AERAARFSCF GGLNDPLRDS LKLSGHVNGS QTINNSTLSR SSSPENAESG  180
VSKEESSVSE QLPGGNTKKR KSIPRGKAKE TPSPATVDAK VAAENNDESN AKRSKQNGTV  240
KASNKEDSKP AEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT  300
GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRMDVNMET LLSKDMFQSR GLLAHAVYSM  360
EPTFSFGYQP QQGLALNNGI ANTTSQQGFQ LPQVNGFIDG NPQVGSIWED DLQSIVQMGF  420
GQNQAQCYQG SIAPGQVKIE L

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20972	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016714064.1	0.0	PREDICTED: transcription factor bHLH62-like
Swissprot	Q9SRT2	1e-100	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A1U8LLK2	0.0	A0A1U8LLK2_GOSHI; transcription factor bHLH62-like
STRING	Gorai.005G022400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-101	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]