PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0102

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 992aa MW: 110336 Da PI: 5.7099

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0102	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.9	2.3e-29	600	650	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++s+++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Gh_A02G0102 600 EKNVSFSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKV 650 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.859	587	670	IPR003035	RWP-RK domain
Pfam	PF02042	6.2E-26	602	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.93E-20	884	977	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.1E-23	889	971	No hit	No description
SMART	SM00666	1.7E-19	892	974	IPR000270	PB1 domain
PROSITE profile	PS51745	17.252	892	974	IPR000270	PB1 domain
Pfam	PF00564	3.0E-15	893	973	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MXEMEYPFSS REKGDGYWVP PRTQMEVGEQ FGGNTRNLLF EDPFNYSELM NLDAYGGWCS 60 SSATTDQMFA SFGFFSYPSM SHASFDSTNS IGQSSSTYVE SGYALGGMDS SYNCADRTVF 120 LKTDEHFGNT VDSKGVELGV RQHTDGNKQN DTSYLGNLLI SRPIGRSLDE KMLRALSLFK 180 DLSGEGILAQ VWVPIKHGDQ YMLTTSDQPY LLDQMLLGYR EVSRTYTFSA EQKPGSFPGL 240 PGRVFLSRVP EWTSNVIHYS KAEYLRITHA VNHEVRGSIG LPVFQPPEMS CCAVLELVTT 300 KEKPNFHSEM EHVCHALEAV NLRTIARPRF LPQCLSKNQR AALAEITDVL RAVCHAHSLP 360 LALTWIPCNY TEEAENEYIE MRVRERNKSW DGKCVLCIED TACYVNEREM QDFVHACVEH 420 YLEGGQGIAG KALQSNHPFF SADVKTYDVS DYPLVHHARK FNLNAAVAIR LRSTYTGDDD 480 YILELFLPIN MKGSLEQQLL LNNLSGTMQR ICRTLRTVSD AEIVGERSKF EFQSVTVPTF 540 PPMAMSQRSS ETALSADSDM NSNHSIPFNE SNSISDGKEA DGPPEKAISG LPRQKRSTTE 600 KNVSFSVLQQ YFSGSLKDAA KNIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV 660 LDSVQGVDGG LKFDPATGEF VAAGTVIQEH NPEKTLMFSN KNPPIGISEA FNHEKSSAPL 720 ASCLDGEDSV VKWDENECSF GGNNNEAARS LLIPSICQEV KKSIVPLNDC SEDSKSVAGA 780 ASWICPKNAT MGSYFRQGDN MWGLNKGNPK VEIADCHFVS LNSSSLAATD EMDTRKEGDD 840 GIDEYNRQHT SSSMTDTSNV SGSRLHGSSS SSEKSMEAKN SRMKTCVDSS SKITIKATYK 900 ENTVRFKFEP SAGCFQVYEE VAKRFKVQNG TFQLNYLDDE GEWVMLVSDS DLHECLEIME 960 YVGTRSAKFQ VRDVPCTMGS SSSSNCFLSR NS

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MXEMEYPFSS REKGDGYWVP PRTQMEVGEQ FGGNTRNLLF EDPFNYSELM NLDAYGGWCS  60
SSATTDQMFA SFGFFSYPSM SHASFDSTNS IGQSSSTYVE SGYALGGMDS SYNCADRTVF  120
LKTDEHFGNT VDSKGVELGV RQHTDGNKQN DTSYLGNLLI SRPIGRSLDE KMLRALSLFK  180
DLSGEGILAQ VWVPIKHGDQ YMLTTSDQPY LLDQMLLGYR EVSRTYTFSA EQKPGSFPGL  240
PGRVFLSRVP EWTSNVIHYS KAEYLRITHA VNHEVRGSIG LPVFQPPEMS CCAVLELVTT  300
KEKPNFHSEM EHVCHALEAV NLRTIARPRF LPQCLSKNQR AALAEITDVL RAVCHAHSLP  360
LALTWIPCNY TEEAENEYIE MRVRERNKSW DGKCVLCIED TACYVNEREM QDFVHACVEH  420
YLEGGQGIAG KALQSNHPFF SADVKTYDVS DYPLVHHARK FNLNAAVAIR LRSTYTGDDD  480
YILELFLPIN MKGSLEQQLL LNNLSGTMQR ICRTLRTVSD AEIVGERSKF EFQSVTVPTF  540
PPMAMSQRSS ETALSADSDM NSNHSIPFNE SNSISDGKEA DGPPEKAISG LPRQKRSTTE  600
KNVSFSVLQQ YFSGSLKDAA KNIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV  660
LDSVQGVDGG LKFDPATGEF VAAGTVIQEH NPEKTLMFSN KNPPIGISEA FNHEKSSAPL  720
ASCLDGEDSV VKWDENECSF GGNNNEAARS LLIPSICQEV KKSIVPLNDC SEDSKSVAGA  780
ASWICPKNAT MGSYFRQGDN MWGLNKGNPK VEIADCHFVS LNSSSLAATD EMDTRKEGDD  840
GIDEYNRQHT SSSMTDTSNV SGSRLHGSSS SSEKSMEAKN SRMKTCVDSS SKITIKATYK  900
ENTVRFKFEP SAGCFQVYEE VAKRFKVQNG TFQLNYLDDE GEWVMLVSDS DLHECLEIME  960
YVGTRSAKFQ VRDVPCTMGS SSSSNCFLSR NS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633685.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_017633686.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_017633687.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_017633688.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_017633689.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2P5Q0F0	0.0	A0A2P5Q0F0_GOSBA; Uncharacterized protein
STRING	EOY04774	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]