PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0003

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 756aa MW: 82743.3 Da PI: 6.5392

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0003	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	418.8	4.8e-128	387	743	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lLl+cAeavs +++e+a+++L +ls+l++p g++ qR+aayf eA++arl++s+ +++++lpp+++s++++++ ++a+++f+ +sP++kfsh+taN Gh_A02G0003 387 LTLLLQCAEAVSVNKFEEANRMLLELSQLSTPFGTSAQRVAAYFSEAMSARLLSSCLGICATLPPNPQSQSHTQKIVSAFQVFNGISPFVKFSHFTAN 484 579********************************************************************************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 qaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g s e+le+tg+rL++fA++lg+pf+f + va+++ +le+e+L+v+ Gh_A02G0003 485 QAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SLEALEATGKRLSDFADKLGLPFQFYP-VADKVGNLEPERLKVS 577 **********************************************....9**********************.7*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 + Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq++ +++++Fl rf+ea++yysa+fdsl a++++eseer++vE++ll++ei+ Gh_A02G0003 578 KTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLRRLAPKVVTVVEQDLRRQEGPFLGRFVEAIHYYSAVFDSLGASYGEESEERHVVEQQLLSKEIR 669 ******9..999999999999....***************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+a g + ++++Wre+l+++GFk ++l +aa+qa lll +++s+gy++ e++g+l lgWkd L+++SaWr Gh_A02G0003 670 NVLALGGGS-----MKFHNWREKLQQCGFKGISLAGNAATQATLLLGMFPSHGYTLVEDNGALKLGWKDLCLLTASAWR 743 ***98.....78************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.174	360	723	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-125	387	743	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MGASDLVDEN HSEINGSSNS RGHPVAVGNN TSDGKMMRKR MASEIADNQR FPRRTLASEP 60 EPENNTVCSF LPAPASSNPL LNHSTIKMNT AIFPSANFIA VTSGGPAVLS TTTSTFTCID 120 TISTSKPHPP AICGFSGLPL FPPTDRNRNS VTATTASDSV IISPISNSMD DTSATVWIDG 180 VIRDLIHTSS NVSISQIIHN VREIIYPCNP NLATLLEYRL RSLVDPVERR SKEGEASLLQ 240 RNHSQQQGSS GLTFNFDPAL GSLPNCSLPE SCSMSQYLNW EINPLSVSNS AVATQHQHHN 300 QISSSPSATT PPVLSLCQTP PHHQQTRVQQ PLPVPEENPS PVEKTTPSTT ACTTPTSTFQ 360 IVQACSARDR KEEIRQQKRD EEGLHLLTLL LQCAEAVSVN KFEEANRMLL ELSQLSTPFG 420 TSAQRVAAYF SEAMSARLLS SCLGICATLP PNPQSQSHTQ KIVSAFQVFN GISPFVKFSH 480 FTANQAIQEA FEREERVHII DLDIMQGLQW PGLFHILASR PGGPPHVRLT GLGTSLEALE 540 ATGKRLSDFA DKLGLPFQFY PVADKVGNLE PERLKVSKTE AVAVHWLQHS LYDVTGSDTN 600 TLWLLRRLAP KVVTVVEQDL RRQEGPFLGR FVEAIHYYSA VFDSLGASYG EESEERHVVE 660 QQLLSKEIRN VLALGGGSMK FHNWREKLQQ CGFKGISLAG NAATQATLLL GMFPSHGYTL 720 VEDNGALKLG WKDLCLLTAS AWRPGEDTLP FQFHAN

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MGASDLVDEN HSEINGSSNS RGHPVAVGNN TSDGKMMRKR MASEIADNQR FPRRTLASEP  60
EPENNTVCSF LPAPASSNPL LNHSTIKMNT AIFPSANFIA VTSGGPAVLS TTTSTFTCID  120
TISTSKPHPP AICGFSGLPL FPPTDRNRNS VTATTASDSV IISPISNSMD DTSATVWIDG  180
VIRDLIHTSS NVSISQIIHN VREIIYPCNP NLATLLEYRL RSLVDPVERR SKEGEASLLQ  240
RNHSQQQGSS GLTFNFDPAL GSLPNCSLPE SCSMSQYLNW EINPLSVSNS AVATQHQHHN  300
QISSSPSATT PPVLSLCQTP PHHQQTRVQQ PLPVPEENPS PVEKTTPSTT ACTTPTSTFQ  360
IVQACSARDR KEEIRQQKRD EEGLHLLTLL LQCAEAVSVN KFEEANRMLL ELSQLSTPFG  420
TSAQRVAAYF SEAMSARLLS SCLGICATLP PNPQSQSHTQ KIVSAFQVFN GISPFVKFSH  480
FTANQAIQEA FEREERVHII DLDIMQGLQW PGLFHILASR PGGPPHVRLT GLGTSLEALE  540
ATGKRLSDFA DKLGLPFQFY PVADKVGNLE PERLKVSKTE AVAVHWLQHS LYDVTGSDTN  600
TLWLLRRLAP KVVTVVEQDL RRQEGPFLGR FVEAIHYYSA VFDSLGASYG EESEERHVVE  660
QQLLSKEIRN VLALGGGSMK FHNWREKLQQ CGFKGISLAG NAATQATLLL GMFPSHGYTL  720
VEDNGALKLG WKDLCLLTAS AWRPGEDTLP FQFHAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	370	744	3	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481282.1	0.0	PREDICTED: protein SCARECROW-like
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A0D2R6S0	0.0	A0A0D2R6S0_GOSRA; Uncharacterized protein
STRING	Gorai.005G001300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8164	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein