PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1864
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 176aa    MW: 19055.3 Da    PI: 8.2141
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1864genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.82.4e-5629123195
        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                  vreq+rflPian+srimkk+lPanaki+kdaketvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy++plk+yl+kyre ++
  Gh_A01G1864  29 VREQERFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKIYLTKYREGDT 123
                  59*****************************************************************************************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.4E-5424127IPR009072Histone-fold
SuperFamilySSF471131.86E-3932125IPR009072Histone-fold
PfamPF008081.8E-283599IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-216381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-2182100No hitNo description
PRINTSPR006152.5E-21101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MATSAPVPAS PGGGGSHESG GEQSPRSNVR EQERFLPIAN ISRIMKKALP ANAKIAKDAK  60
ETVQECVSEF ISFITSEASD KCQKEKRKTI NGDDLLWAMA TLGFEDYIDP LKIYLTKYRE  120
GDTKGSVKGG DTFAKKDVQP GPNAQLAHQG SFSQGVYYGN SQSQSQAHMM ASDARH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-4829120192Transcription factor HapC (Eurofung)
4g92_B9e-4829120192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.73650.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1855411e-65AY185541.1 Gossypium barbadense clone 1__10 putative CCAAT-binding transcription factor gene, partial cds.
GenBankAY1855421e-65AY185542.1 Gossypium barbadense clone 2__10 putative CCAAT-binding transcription factor gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616652.11e-118PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X1
SwissprotQ8VYK46e-83NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0B0MYK51e-129A0A0B0MYK5_GOSAR; Nuclear transcription factor Y subunit B-10-like protein
STRINGGorai.002G250600.11e-117(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-74nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]