PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1837
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 481aa    MW: 54029.1 Da    PI: 8.7311
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1837genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08350397448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd+++q+G g+W+ I + +      Rt+ +++++w+++l
      Gh_A01G1837 350 WTLAEVIKLVDGIAQYGVGRWTDIKKLLFassAYRTPVDLRDKWRNLL 397
                      ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.078342401IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-11342401IPR009057Homeodomain-like
SMARTSM007171.3E-8346399IPR001005SANT/Myb domain
CDDcd116601.29E-17348398No hitNo description
SuperFamilySSF466891.2E-15348407IPR009057Homeodomain-like
PfamPF002499.8E-7350397IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MRTERKPHLI KKPADAKRQR VDESLGPGLK DEATEVEHLL VEPKSEHVSV DRVFCFGKEN  60
IEKHLKMEDF SCAFDYGWKI GSGGLDSIHG QGGDDLKLEV LDGLLDEVDE VDDIQAAHDL  120
SSACEDFLLD IEFPEKFSEL DCGLYEGSNL RNSSSESHSP GGSSNSVGGM SESSIVTVQE  180
SNSKNGVLGK MVNCDKHHTI RSECGCQAPV METICPSKEH GQDFVESDDE KPLVSFIVSN  240
KKVKSSVKVT KGGTLLRQKR LRKPTKRYIE EFSRNSTTSG KNKCLKVRSQ EEFSQIPSES  300
QPRRGRPKKI MPKMEFESDC ELSASESEDE CKRTKRSKTA CDRRKHQRMW TLAEVIKLVD  360
GIAQYGVGRW TDIKKLLFAS SAYRTPVDLR DKWRNLLRSS SAHKHNRKEL QGETNVKHYV  420
RPLPKTVVCR IRELATIHPY PKARSPNLSS INSDPSSKQS TTTKGTPINT HGRNLRGKKC  480
N
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.9470.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666382.10.0PREDICTED: uncharacterized protein LOC107886814 isoform X1
RefseqXP_016666383.10.0PREDICTED: uncharacterized protein LOC107886814 isoform X1
TrEMBLA0A1U8HK010.0A0A1U8HK01_GOSHI; uncharacterized protein LOC107886814 isoform X1
STRINGGorai.002G247800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-24TRF-like 6