PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1828
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 262aa    MW: 28872.8 Da    PI: 7.7607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1828genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+d ++++G+g +W + +++ g++R++k+c++rw++yl
      Gh_A01G1828 14 KGPWSPEEDAMLKDFIHKHGTGgNWISLPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding39.99.7e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+++ +Ed ++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
      Gh_A01G1828  69 GKFSDDEDRIICNLFASIGSR-WSIIAANLP-GRTDNDIKNYWNT 111
                      89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.958962IPR017930Myb domain
SuperFamilySSF466891.23E-2611109IPR009057Homeodomain-like
SMARTSM007174.3E-121364IPR001005SANT/Myb domain
PfamPF002491.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231569IPR009057Homeodomain-like
CDDcd001678.16E-101662No hitNo description
PROSITE profilePS5129422.59963117IPR017930Myb domain
SMARTSM007175.5E-1267115IPR001005SANT/Myb domain
PfamPF002491.9E-1169111IPR001005SANT/Myb domain
CDDcd001674.47E-970113No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRAPCCDKS NVKKGPWSPE EDAMLKDFIH KHGTGGNWIS LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGK FSDDEDRIIC NLFASIGSRW SIIAANLPGR TDNDIKNYWN TKLKKKLFGM  120
VPHSYSSSSF SNITTAGSVL QSQQQRGFSA NRLGQNKDSE FGYGGGSGEN HGDQQIGNLE  180
SCFYNEGDKN YHHNLMDSSG DVANGFSSSI GSIGSTIDSN FLYGETTSLD YGIEGINQQI  240
SSTSSSCEGF GFYQHNANDY PC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1156440.0HQ115644.1 Gossypium hirsutum DNA-binding transcription factor blind 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313658.10.0transcription factor MYB36-like
TrEMBLE7D5Q40.0E7D5Q4_GOSHI; DNA-binding transcription factor blind 2
STRINGGorai.002G246700.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-74myb domain protein 36