PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1801
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26419.4 Da    PI: 5.8166
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1801genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-2065119256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +k+ ++t++ql+ Le+ F+++++++ +++ +L+k+lgL+ rq+ vWFqNrRa++k
  Gh_A01G1801  65 KKKKRLTSDQLDSLERSFQEENKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 119
                  78889*************************************************9 PP

2HD-ZIP_I/II118.24.6e-3865156192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rl+++q+ +LE+sF+ee+kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kql + y++Lk++yd    e+++L++ev eL+  l+
  Gh_A01G1801  65 KKKKRLTSDQLDSLERSFQEENKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKAKQLQHSYNTLKHEYDVTYMEKQMLQDEVMELKGMLM 156
                  59*************************************************************************************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-2053122IPR009057Homeodomain-like
PROSITE profilePS5007118.09161121IPR001356Homeobox domain
SMARTSM003893.6E-1963125IPR001356Homeobox domain
PfamPF000461.1E-1765119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-2167128IPR009057Homeodomain-like
CDDcd000865.47E-1769122No hitNo description
PRINTSPR000313.5E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000313.5E-5101117IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDWNGTIRPF ISRLEPSLNF PYNYNYNQYP GVEDMNNQGF EEAGNGLVPD LNMNSFKNNG  60
KGNNKKKKRL TSDQLDSLER SFQEENKLDP DRKMKLSKEL GLQPRQIAVW FQNRRARWKA  120
KQLQHSYNTL KHEYDVTYME KQMLQDEVME LKGMLMEQAT RNQVSTVYKE ISGGETIESS  180
SIRSSNKPSR AGNDYDPIVE CNNIFNEDEN NPVSTHYWDI QLPSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKAKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5843761e-38JX584376.1 Gossypium hirsutum clone NBRI_GE17666 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732022.11e-169PREDICTED: homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR06e-47ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A1U8MYU51e-168A0A1U8MYU5_GOSHI; homeobox-leucine zipper protein ATHB-22-like
STRINGGorai.002G244000.11e-110(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-42homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]