PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1800
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 437aa    MW: 50138.7 Da    PI: 5.7258
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1800genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.44.5e-2491198186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                  +Wt+++v++Li a+ +++++  +++                     +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ ++e++
  Gh_A01G1800  91 KWTDNMVRLLIMAVYYIGDDQASSEggnnndpsgkkkgvggsggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACEVV 188
                  7**************98888887666678889999999******************************************************55**** PP

     trihelix  77 stcpyfdqle 86 
                  ++ +++++++
  Gh_A01G1800 189 ENQRLLESMD 198
                  ******9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.4E-2289223No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MLGLEMPLHP QPQQQPQNPQ SVQNPHSLHH QQHHPQVVAY AHHETQHVKQ GYHPFGSKPK  60
QISTISDEDE PGFTLDDGSS KRKASPWQRM KWTDNMVRLL IMAVYYIGDD QASSEGGNNN  120
DPSGKKKGVG GSGGLLQKKG KWKSVSRAMM EKGFYVSPQQ CEDKFNDLNK RYKRVNDILG  180
KGTACEVVEN QRLLESMDLS PKMKDEVKKL LNSKHLFFRE MCAYHNSCGH VTQEVANETP  240
PQMQQRCLHS SDNAQIGGNP VDGSTKTLKL EESDDEDDED DDESDDDDDD DDDDETMDGH  300
DEDQNVENSS RKRPRKGGVS PLMQQLSNEI TKVIQDGSKN SWEKKHWMKM KLIQLEEQQV  360
SYQCEAFELE KQRLKWVKFS GKKEREMEKS KLENERKRLE NERMVLIVRQ QELELVDMSD  420
VQQHSSNKRG DLSSFTS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6230810.0JX623081.1 Gossypium hirsutum clone NBRI_GE70112 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732020.10.0PREDICTED: kinesin-related protein 4-like isoform X2
TrEMBLA0A1U8MYZ20.0A0A1U8MYZ2_GOSHI; kinesin-related protein 4-like isoform X2
STRINGGorai.002G243900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-95sequence-specific DNA binding transcription factors