PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A01G1663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 39733.4 Da PI: 6.0651 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.4 | 1.3e-08 | 203 | 250 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Gh_A01G1663 203 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 250 8*************************9....888999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-15 | 197 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.86E-8 | 197 | 254 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.9E-15 | 199 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.519 | 199 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-6 | 203 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-8 | 205 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 361 aa Download sequence Send to blast |
MESNAGATET RSNVTVSDGG EVAALESLQF TDEIHRLISA PATDNASSFT ALLELPATQV 60 VELLHSPESV KLIVASAPNV EDFKGSFHFP SNTGLIQKDA RFSVFSGEGN NKNDKSNSPE 120 MTSKNSSANL EKAVKSEPAE TASSLPLVSD PTVENRNIKR KDREKKVKGS TKKSKPATNE 180 SLEDAEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD 240 EIINHVQSLQ RQVEFLSMSL AAVNPRIDFY LDSSFTSESG STMDGGNFPS LVTPLMWPDV 300 QVNGYRQQFQ HQWHFDTLKQ PIWGREEVCN NYVTPENSLL SYDSSANSAA TLHANQLKME 360 L |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016707794.1 | 0.0 | PREDICTED: transcription factor bHLH48-like isoform X1 | ||||
Swissprot | Q3EAI1 | 2e-94 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A1U8L3Z4 | 0.0 | A0A1U8L3Z4_GOSHI; transcription factor bHLH48-like isoform X1 | ||||
STRING | Gorai.002G229100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2576 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57800.2 | 1e-106 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|