PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G1661

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 346aa MW: 37901.2 Da PI: 9.1782

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G1661	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.4e-13	274	319	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +AveYIk+Lq Gh_A01G1661 274 SIAERVRRTRISERMRKLQKLVPNM----DKQTNTADMLDLAVEYIKDLQ 319 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.059	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-16	271	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.30E-12	272	321	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.5E-15	273	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-10	274	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-11	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MDSSTHQSYQ NQNNQSNSGL LRFRSAPSSL LATIDCGVNK GGFESRFINP SSGGDNETED 60 KSGSEAAVNY ANSAPTYSGL PPQYPRQSCP MDNSYELLGL NHHGQGKPVT SSLMRQSSSP 120 PGLFTNLSVQ NGFSGMKGLG NYGGVNGTSG ELSPSSNRLK NQISFSSRQP SSLGILSQIS 180 EIENENLGAN SFDGGKPEYQ CGSWNESAQL TEKHKLFTNN QNGDIGSGVH VLPRHLSLPK 240 TSNEMAVMEK YLQFQDSVPC KIRAKRGCAT HPRSIAERVR RTRISERMRK LQKLVPNMDK 300 QTNTADMLDL AVEYIKDLQK QFKSLSDNRA NCKCLNTQKT VPNQIL

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MDSSTHQSYQ NQNNQSNSGL LRFRSAPSSL LATIDCGVNK GGFESRFINP SSGGDNETED  60
KSGSEAAVNY ANSAPTYSGL PPQYPRQSCP MDNSYELLGL NHHGQGKPVT SSLMRQSSSP  120
PGLFTNLSVQ NGFSGMKGLG NYGGVNGTSG ELSPSSNRLK NQISFSSRQP SSLGILSQIS  180
EIENENLGAN SFDGGKPEYQ CGSWNESAQL TEKHKLFTNN QNGDIGSGVH VLPRHLSLPK  240
TSNEMAVMEK YLQFQDSVPC KIRAKRGCAT HPRSIAERVR RTRISERMRK LQKLVPNMDK  300
QTNTADMLDL AVEYIKDLQK QFKSLSDNRA NCKCLNTQKT VPNQIL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016706397.1	0.0	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	2e-98	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1U8KVA6	0.0	A0A1U8KVA6_GOSHI; transcription factor bHLH130-like
STRING	Gorai.002G228900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6293	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-99	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]