PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G1632

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 346aa MW: 38284 Da PI: 8.29

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G1632	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1e-31	178	232	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++Fv++v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Gh_A01G1632 178 KTRIRWTQDLHDKFVDCVKRLGGAEKATPKAILKLMDTEGLTIFHVKSHLQKYRI 232 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.441	175	235	IPR017930	Myb domain
SuperFamily	SSF46689	1.52E-16	176	232	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.1E-28	177	233	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.2E-24	178	233	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-8	182	231	IPR001005	SANT/Myb domain
Pfam	PF14379	8.2E-22	260	306	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MATPMVDGTV SHHPKSSSSS TIMGGFQTPG AAFYATERCM GFPQYGSSSQ GAATSFCSQY 60 NKLCNSQLPS FHASGDNFSL QSLMKSQIFC NQYQKSSDKS CTTTEDPSHD LSNLLGTNAA 120 TLPNHFSVPF RGNQDQGAYC NSHGSSPAKL SFFLQEKQSS SGSFSVSPSS TGTVLTSKTR 180 IRWTQDLHDK FVDCVKRLGG AEKATPKAIL KLMDTEGLTI FHVKSHLQKY RIAKYMPDSA 240 QGKSEKRNDL TQIDVKTGLH LTEALQLQLD VQRRLHEQLE IQRNLQLRIE EQGRQLKMMI 300 DQQQKTSESL LKNQEFNISP FDPSFSFQDV VETSIPESLG TGKLIV

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MATPMVDGTV SHHPKSSSSS TIMGGFQTPG AAFYATERCM GFPQYGSSSQ GAATSFCSQY  60
NKLCNSQLPS FHASGDNFSL QSLMKSQIFC NQYQKSSDKS CTTTEDPSHD LSNLLGTNAA  120
TLPNHFSVPF RGNQDQGAYC NSHGSSPAKL SFFLQEKQSS SGSFSVSPSS TGTVLTSKTR  180
IRWTQDLHDK FVDCVKRLGG AEKATPKAIL KLMDTEGLTI FHVKSHLQKY RIAKYMPDSA  240
QGKSEKRNDL TQIDVKTGLH LTEALQLQLD VQRRLHEQLE IQRNLQLRIE EQGRQLKMMI  300
DQQQKTSESL LKNQEFNISP FDPSFSFQDV VETSIPESLG TGKLIV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	178	235	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	178	235	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	178	235	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	178	235	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	178	235	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	178	235	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	178	235	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	178	235	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016706742.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Swissprot	Q0WVU3	6e-78	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A1U8KWF2	0.0	A0A1U8KWF2_GOSHI; protein PHR1-LIKE 1-like
STRING	Gorai.002G225400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	3e-76	G2-like family protein