PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1616
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 292aa    MW: 33238.3 Da    PI: 8.5722
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1616genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.5e-18168221356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +R  ++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Gh_A01G1616 168 QRYXLSKEQSAFLEESFKEHNNLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221
                  78999***********************************************98 PP
2HD-ZIP_I/II122.12.8e-39169256391
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +  lskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+kev+eLr +l
  Gh_A01G1616 169 RYXLSKEQSAFLEESFKEHNNLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCCETLTEENRRLHKEVQELR-AL 256
                  5679*********************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-18162224IPR009057Homeodomain-like
PROSITE profilePS5007116.277163223IPR001356Homeobox domain
SMARTSM003897.7E-16165227IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.3E-17168221IPR009057Homeodomain-like
PfamPF000462.5E-15168221IPR001356Homeobox domain
CDDcd000862.71E-15169224No hitNo description
PROSITE patternPS000270198221IPR017970Homeobox, conserved site
SMARTSM003409.1E-25223266IPR003106Leucine zipper, homeobox-associated
PfamPF021838.9E-11223257IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MELGLSLGGS SKPFSFLEKT PKLSSNDHLG FCMGLGRSQE KRDSLEAERR GNGGDIKRVS  60
SDPHLQLHLR LPWLFDNLQE TGLSKGRGRG LDVNRLPMVA LAGEATAGHS SPDRAVSSCQ  120
LDFWFRKGNS RGKRDMDAET KRGSSRASDD DEDENGSYWE LSIFMENQRY XLSKEQSAFL  180
EESFKEHNNL NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTELDCE YLKRCCETLT  240
EENRRLHKEV QELRALKTCQ PFYMQLPATT LTMCPSCERV TTTSATDAKI GI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215223RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622093.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466655e-90HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0D2QAH50.0A0A0D2QAH5_GOSRA; Uncharacterized protein
STRINGGorai.002G223900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-79homeobox from Arabidopsis thaliana