PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G1608 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 29338.3 Da PI: 9.2092 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.9 | 1.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+ +LCda+v++iif+s+gk++ey+s Gh_A01G1608 9 KRIENSSNRQVTYSKRRNGIMKKAKEITILCDAKVSLIIFGSSGKMHEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 61.2 | 4e-21 | 107 | 168 | 9 | 70 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 +++ + +l++e++++kke++n+q e+Rhl+Ged++sL +keL+ +e++Le++l+ +R k++ Gh_A01G1608 107 VHDGSSRNLSNEIDRIKKENDNMQIELRHLKGEDITSLPYKELMAIEDALENGLTYVRGKQD 168 56667889**************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-35 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.29E-41 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 2.4E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.5E-15 | 111 | 202 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.125 | 112 | 213 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEITILCD AKVSLIIFGS SGKMHEYCSP 60 STNLVDILDQ YQKTSGKKLW DAKHEAISFK AQNNNGCNRS QCKIYLVHDG SSRNLSNEID 120 RIKKENDNMQ IELRHLKGED ITSLPYKELM AIEDALENGL TYVRGKQDIK AYQSLFSFSF 180 VQMDVLDKTW KNTKFLEEDY KQLSFILNQQ QMAYESAREQ MDHGYQRARD YNSQMSSTFQ 240 VQPMQPNLQE RM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 4e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23962 | 1e-110 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC155645 | 1e-140 | KC155645.1 Gossypium hirsutum MADS box protein MADS50 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017622649.1 | 1e-146 | PREDICTED: floral homeotic protein PMADS 2-like | ||||
Swissprot | Q0HA25 | 2e-96 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A0A0D2NRJ2 | 0.0 | A0A0D2NRJ2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G223100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5300 | 27 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 2e-81 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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