PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G1537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 131aa MW: 15153.6 Da PI: 10.374 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.8 | 5.3e-15 | 15 | 98 | 13 | 90 |
TT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 13 sgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ++r+++p k + ++ gg+ ++ ++de gr+W++++ rk+s++ vltkGW+eFv ++L D v F++d++ ++ Gh_A01G1537 15 EKRMTIPSKSL-NCfpalsGGE--HMVDFDVRDECGRVWKFRIYTRKSSNKyrkPVLTKGWREFVCRKELSIDDKVAFYMDKQqADG 98 3579******9.4559996555..567999*************667777776779************************88654444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0021 | 4 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.76E-14 | 4 | 93 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-16 | 4 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-14 | 5 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.7E-12 | 16 | 97 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.333 | 42 | 110 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MATIVKKRLR KTDIEKRMTI PSKSLNCFPA LSGGEHMVDF DVRDECGRVW KFRIYTRKSS 60 NKYRKPVLTK GWREFVCRKE LSIDDKVAFY MDKQQADGSV EYRVTVQKAV KVFGAVFAHK 120 PFPGEASNDI V |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3589 | 1e-177 | ovule |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 73861228 | 1e-177 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467821.1 | 1e-88 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | A0A2P5VYY2 | 6e-92 | A0A2P5VYY2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.002G215500.1 | 5e-88 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16920 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 2e-10 | B3 family protein |