PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G1468

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 931aa MW: 102683 Da PI: 5.9963

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G1468	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.5	1.3e-28	612	662	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ Gh_A01G1468 612 EKTISLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 662 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	601	682	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-24	614	662	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.44E-23	827	919	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.6E-23	831	914	No hit	No description
SMART	SM00666	8.6E-26	833	916	IPR000270	PB1 domain
PROSITE profile	PS51745	24.928	833	916	IPR000270	PB1 domain
CDD	cd06407	5.58E-43	834	915	No hit	No description
Pfam	PF00564	5.3E-17	834	915	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence Send to blast
MEGDGAVPSD FSPNSTFVDA AMDLDLMDEL LFEGCWLETN DDFNFMQPAP STSNDLNQSI 60 TVPSNANLHQ MHQGETERSV SPPRDGSAVG NASSLLQPGT FIVQGTELGS RWWIGPSAES 120 GSSLSVKERL MQAIGYLKES TKDRDLLIQI WVPVNREGKH VLTTEGQPYS LNTNCKSLEI 180 FRDVSKSYNF PAEEDTKESV GLPGRVFLEK LPEWTPDVRF FRSEEYPRIS FAEKYNVGGS 240 LALPVFERAN GTCLGVVEIV TTIQKSNYRP ELEHVCKALE AVDLRSSPNF TPPNVEACNE 300 LYQAALPEIA EVLRSVCKTY KLPLALTWAP CLNQGKSGCR HSYENFYHCV STVDTACFVA 360 DEEFSEFLEA CSEHHMFRGQ GVVGRAFTTN KQCFATDITA FSKTNYPLSH HARMFGLRGA 420 VAIPLQSIFT GLVEFVLELF LPKDCHDSEA QKQMLNSLSS FMQQACQSLH VVVDKMLEEE 480 VILPVKEVVV ASDVRSDNEE TQFTVSSAKE NSPEESSWIA HMMEAQQKGK GVSVSWEYQK 540 EEPKEEFKVT THWEDTQLEL HDKEVLSDFQ QLHQNAESNA SVEGGGGDSS SSGGRGILPS 600 KRAGEKRRTK MEKTISLEVL RQYFAGSLKD AAKSIGVCPT TLKRICRHHG ITRWPSRKIK 660 KVGHSLRKLQ LVIDSVQGAK GAIQIGSFYS SFPELSSPNL SGNGPSSSLK ISGHSKPSEP 720 QLENCMFSQG AAALKSPSSS CSRSSGSSTC CSMGVKQHST SISALCSSDG LIVEDPGGAL 780 KRARSDAELH SLNQEEPKLL ARSQSHKTLG ELPPLETQPG PKTGGQNLRT GGAFRVKATF 840 GEVKIRFSLQ PSWGFRDVQQ EIAKRFKIEY VSRMCLKYLD DDNEWVLLTC DADLEECRDI 900 YKSSQSHTIK ISLHQASHPN LGSSFGSSAP L

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence Send to blast

MEGDGAVPSD FSPNSTFVDA AMDLDLMDEL LFEGCWLETN DDFNFMQPAP STSNDLNQSI  60
TVPSNANLHQ MHQGETERSV SPPRDGSAVG NASSLLQPGT FIVQGTELGS RWWIGPSAES  120
GSSLSVKERL MQAIGYLKES TKDRDLLIQI WVPVNREGKH VLTTEGQPYS LNTNCKSLEI  180
FRDVSKSYNF PAEEDTKESV GLPGRVFLEK LPEWTPDVRF FRSEEYPRIS FAEKYNVGGS  240
LALPVFERAN GTCLGVVEIV TTIQKSNYRP ELEHVCKALE AVDLRSSPNF TPPNVEACNE  300
LYQAALPEIA EVLRSVCKTY KLPLALTWAP CLNQGKSGCR HSYENFYHCV STVDTACFVA  360
DEEFSEFLEA CSEHHMFRGQ GVVGRAFTTN KQCFATDITA FSKTNYPLSH HARMFGLRGA  420
VAIPLQSIFT GLVEFVLELF LPKDCHDSEA QKQMLNSLSS FMQQACQSLH VVVDKMLEEE  480
VILPVKEVVV ASDVRSDNEE TQFTVSSAKE NSPEESSWIA HMMEAQQKGK GVSVSWEYQK  540
EEPKEEFKVT THWEDTQLEL HDKEVLSDFQ QLHQNAESNA SVEGGGGDSS SSGGRGILPS  600
KRAGEKRRTK MEKTISLEVL RQYFAGSLKD AAKSIGVCPT TLKRICRHHG ITRWPSRKIK  660
KVGHSLRKLQ LVIDSVQGAK GAIQIGSFYS SFPELSSPNL SGNGPSSSLK ISGHSKPSEP  720
QLENCMFSQG AAALKSPSSS CSRSSGSSTC CSMGVKQHST SISALCSSDG LIVEDPGGAL  780
KRARSDAELH SLNQEEPKLL ARSQSHKTLG ELPPLETQPG PKTGGQNLRT GGAFRVKATF  840
GEVKIRFSLQ PSWGFRDVQQ EIAKRFKIEY VSRMCLKYLD DDNEWVLLTC DADLEECRDI  900
YKSSQSHTIK ISLHQASHPN LGSSFGSSAP L

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3331	0.0	boll\| ovule\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016711623.1	0.0	PREDICTED: protein NLP2-like isoform X1
Refseq	XP_016711624.1	0.0	PREDICTED: protein NLP2-like isoform X1
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A1U8LEM6	0.0	A0A1U8LEM6_GOSHI; protein NLP2-like isoform X1
STRING	Gorai.002G206700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein