PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A01G1348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 199aa MW: 22401.2 Da PI: 8.3604 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 179.6 | 1.8e-55 | 7 | 150 | 21 | 168 |
YABBY 21 ilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp 114 i vsvP +sl++vvtvrCGhCtsllsvn++kas +lla+ h de +e + ee + +++ +s ++s s ++ s+n +e++ rv p Gh_A01G1348 7 IKKVSVPCNSLSMVVTVRCGHCTSLLSVNMMKASfvplHLLASFAHDDEPKEEAVSEEVGGHRK---------TSDRRSPSLMSSSDNGEEDIVRVNP 95 567***************************9998555556666665333333333333333322.........2222222222237889999999988 PP YABBY 115 .virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 v++PPekrqr+Psaynrfikeei+r+k++nP+i h+eafs+aaknWahfP+ih Gh_A01G1348 96 tVNKPPEKRQRAPSAYNRFIKEEIRRLKTQNPNIPHKEAFSTAAKNWAHFPPIHK 150 8*****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.1E-53 | 8 | 150 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.15E-9 | 96 | 147 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.2E-7 | 98 | 150 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MASDKEIKKV SVPCNSLSMV VTVRCGHCTS LLSVNMMKAS FVPLHLLASF AHDDEPKEEA 60 VSEEVGGHRK TSDRRSPSLM SSSDNGEEDI VRVNPTVNKP PEKRQRAPSA YNRFIKEEIR 120 RLKTQNPNIP HKEAFSTAAK NWAHFPPIHK HNKGEGVSCE RDEGEASWNV EATEVHIQGN 180 DFRERKAARN SIWTKSPFE |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX583559 | 8e-49 | JX583559.1 Gossypium hirsutum clone NBRI_GE16632 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017621468.1 | 1e-138 | PREDICTED: axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 5e-65 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2P5XLK5 | 1e-138 | A0A2P5XLK5_GOSBA; Uncharacterized protein | ||||
STRING | EOY00530 | 2e-87 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8044 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-62 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|