PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G1314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 419aa MW: 45907.2 Da PI: 8.646 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 66 | 115 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Gh_A01G1314 66 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 115 59*******.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.5E-32 | 66 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-21 | 66 | 123 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-29 | 66 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-11 | 66 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.61E-29 | 66 | 122 | No hit | No description |
PROSITE profile | PS51032 | 22.049 | 66 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MEEAFRRLKG VVNVTDLDPR DATAYRKKSA VSTTTSATST TTTSTTPTTT NKRSLKENGG 60 TGVTMRYRGV RRRPWGRYAA EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGIKART 120 NFVYPVTEPH SASDHLLPQF SFSRQSQLNR KHHRFGHSSK WPPLANSQVG DFSLGSGGHQ 180 RNASLNMLLL RDLLNSSSYL SFQAPPPSLV DQFQLINGTS SAASSLPSSF SIPTILPGGT 240 SLNSPTSCSL RASGNFADSL IDPTMTLPRK EKNSSHTTSV PALSNSQADD MEFFRSEPSD 300 SGLLQEIIQG FLPKPSSKKS DTDCIQHSIV PLVTEMSSSQ SLSGLKESKK SEHLGGYIDY 360 CQGVPQQFES FNGITGSQVV PYSNEIPVNH LQLGQDCMVD DICQYPDFMR TLATRVQNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-20 | 57 | 122 | 2 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX590697 | 9e-75 | JX590697.1 Gossypium hirsutum clone NBRI_GE25669 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016702293.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A1U8KMR1 | 0.0 | A0A1U8KMR1_GOSHI; ethylene-responsive transcription factor ESR2-like | ||||
STRING | Gorai.002G187500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7355 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-13 | DORNROSCHEN-like |