PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G1288

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 388aa MW: 44412.6 Da PI: 7.797

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G1288	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.1	6.4e-25	55	124	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W ++e++ Li +r+em+ r++++k++k+lWe++s+ mr++gf rsp++C++kw+nl k++kk k+++++ Gh_A01G1288 55 WVQDETRSLIGFRKEMDGRFNTSKSNKHLWEKISAMMRKKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS 124 *****************************************************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-4	45	116	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.269	47	111	IPR017877	Myb-like domain
SMART	SM00717	2.6E-4	51	113	IPR001005	SANT/Myb domain
CDD	cd12203	4.59E-28	53	118	No hit	No description
Pfam	PF13837	1.1E-18	54	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MARDMIIEVT TNGGLPDHLR HHHPHSLQQQ QQMILGESSG DDPEVKAPKK RAETWVQDET 60 RSLIGFRKEM DGRFNTSKSN KHLWEKISAM MRKKGFDRSP TMCTDKWRNL LKEFKKAKHQ 120 DRGSGSVKIT YKEIEEILRE RTKKPYKAPT PPPKLDSFMH FSDKGLCFED TSITFGPLEG 180 MLLLLLPSGR PALNLEQGLD HDGHPLAITT ANAVAVSGVP PWNWRETPGN GGDRLPYGGR 240 VITVKYRDYA QRIGIDGTAE AIREAIKSAF RLRTKRAFWL EDEDHIIRSL DGEMPLGNYT 300 LHLDEGLAVK VCLYDVSDHI PVHTEEKIFY TEDDYREYLV LRGYVGLKEI DGYRNINSMD 360 DLQTNTIYRG VSWKLLHLEG LYNRVALP

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MARDMIIEVT TNGGLPDHLR HHHPHSLQQQ QQMILGESSG DDPEVKAPKK RAETWVQDET  60
RSLIGFRKEM DGRFNTSKSN KHLWEKISAM MRKKGFDRSP TMCTDKWRNL LKEFKKAKHQ  120
DRGSGSVKIT YKEIEEILRE RTKKPYKAPT PPPKLDSFMH FSDKGLCFED TSITFGPLEG  180
MLLLLLPSGR PALNLEQGLD HDGHPLAITT ANAVAVSGVP PWNWRETPGN GGDRLPYGGR  240
VITVKYRDYA QRIGIDGTAE AIREAIKSAF RLRTKRAFWL EDEDHIIRSL DGEMPLGNYT  300
LHLDEGLAVK VCLYDVSDHI PVHTEEKIFY TEDDYREYLV LRGYVGLKEI DGYRNINSMD  360
DLQTNTIYRG VSWKLLHLEG LYNRVALP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	7e-44	49	131	1	83	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU896413	8e-35	KU896413.1 Hibiscus cannabinus microsatellite HC_ES_37_CTC sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016701410.1	0.0	PREDICTED: trihelix transcription factor GT-1-like isoform X1
Swissprot	Q9FX53	1e-173	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1U8KG15	0.0	A0A1U8KG15_GOSHI; trihelix transcription factor GT-1-like isoform X1
STRING	Gorai.002G190600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-157	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]