PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1153
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 527aa    MW: 60073.1 Da    PI: 7.4639
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1153genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.32.7e-30112197187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l+L+e+r+ ++ +++++++k+plW+evs++m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Gh_A01G1153 112 RWPRQETLTLLEIRSHLDPKFKEANQKGPLWDEVSRVMfEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 197
                  8*************************************99******************************98..55667*******85 PP
2trihelix58.51.8e-18392475282
     trihelix   2 WtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkryk..kikegekkrtsessstcpyf 82 
                  W++ ev  Li++r+ me+r+++   + +  lWee+++km   gfers  +Ck+kw+ + + y   k+ke++kkr +e+s+ + y+
  Gh_A01G1153 392 WQEAEVSRLIQLRTAMETRFQQvgYSEEVVLWEEIAAKMGCLGFERSGLMCKDKWDTIGGSYTlmKTKESNKKR-KENSRGFDYY 475
                  *********************9434799**********************************833555556655.6666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.098109172IPR001005SANT/Myb domain
PROSITE profilePS500906.864111170IPR017877Myb-like domain
CDDcd122031.46E-20112177No hitNo description
PfamPF138371.4E-19112198No hitNo description
Gene3DG3DSA:1.10.10.609.7E-5383449IPR009057Homeodomain-like
PROSITE profilePS500906.47384450IPR017877Myb-like domain
SMARTSM007171.2388452IPR001005SANT/Myb domain
PfamPF138379.7E-13391475No hitNo description
CDDcd122033.54E-17392449No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEMEDHRHHQ YAIPDLRQLL NGKPINFQAI PQDTELFSPG HHRNLPPPQQ PHHPFDVMQM  60
VGRHEFPSDS TGNTNGTPMA AVATVTSAST LSPSCGFDGE ATAFGGDGGN GRWPRQETLT  120
LLEIRSHLDP KFKEANQKGP LWDEVSRVMF EEHGYQRSGK KCREKFENLY KYYKKTKEGK  180
AGRQDGKHYR FFRQLEALYG DTSNNNGVLG QETPLIGNSF LFHGAQNSIN TQANQEIYHS  240
QKLCSDSLSL SSSSKFDTCS SDNNDLSSAK LKKKRGCRSW KAKIKEFIDS QIGKLMERQE  300
AWLVKLTKTL EEKEQERVLR EEQWRKEAAI RIDREHKFWA KERAWIEARD AALMEALQNL  360
AGKQLKAASS DGENHNENGN GTINHTVKAD GWQEAEVSRL IQLRTAMETR FQQVGYSEEV  420
VLWEEIAAKM GCLGFERSGL MCKDKWDTIG GSYTLMKTKE SNKKRKENSR GFDYYQPHET  480
IFTQGPETLR LQPNDGSSHA VSDSCFRFFM ADGDNNLWEN YGLKLSN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.2090.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO841731400.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}.
UniprotTISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775468e-79JX577546.1 Gossypium hirsutum clone NBRI_GE9395 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722381.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS01e-133PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A1U8M6E20.0A0A1U8M6E2_GOSHI; trihelix transcription factor PTL-like
STRINGGorai.002G159600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-118Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]